Magnesium in PDB 6eyp: X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A

Enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A

All present enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A, PDB code: 6eyp was solved by I.I.Prokofev, V.V.Balaev, A.G.Gabdoulkhakov, C.Betzel, A.A.Lashkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	26.48 / 1.22
*Space group*	P 3₂
*Cell size a, b, c (Å), α, β, γ (°)*	92.940, 92.940, 140.231, 90.00, 90.00, 120.00
*R / R_free (%)*	13.8 / 17

Other elements in 6eyp:

The structure of X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A also contains other interesting chemical elements:

Sodium

(Na)

3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A (pdb code 6eyp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A, PDB code: 6eyp:

Magnesium binding site 1 out of 1 in 6eyp

Go back to

Magnesium Binding Sites List in 6eyp

Magnesium binding site 1 out of 1 in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Mg303 b:11.3 occ:0.61	O	C:HOH603	2.0	22.1	1.0
	O	C:HOH647	2.0	18.4	1.0
	O	C:HOH427	2.1	17.2	1.0
	OD1	C:ASN102	2.1	17.7	1.0
	O	C:HOH516	2.1	20.1	1.0
	O	C:HOH585	2.2	19.8	1.0
	CG	C:ASN102	3.3	16.0	1.0
	O	C:HOH586	4.0	19.7	1.0
	ND2	C:ASN102	4.1	16.8	1.0
	O	C:HOH679	4.2	37.4	1.0
	O	C:PRO99	4.2	14.2	1.0
	OE1	C:GLN224	4.2	14.4	1.0
	CB	C:ASN102	4.3	14.1	1.0
	O	C:VAL101	4.4	12.8	1.0
	NE2	C:GLN224	4.5	13.6	1.0
	CA	C:ASN102	4.5	12.9	1.0
	O	C:HOH578	4.5	36.9	1.0
	CD	C:GLN224	4.7	13.4	1.0
	O	C:HOH517	4.8	39.3	1.0
	C	C:VAL101	4.9	11.4	1.0
	N	C:ASN102	5.0	11.6	1.0

Reference:

I.I.Prokofev, V.V.Balaev, A.G.Gabdoulkhakov, C.Betzel, A.A.Lashkov. X-Ray Structure of the Unliganded Uridine Phosphorylase From Vibrio Cholerae at 1.22A To Be Published.

Page generated: Tue Oct 1 00:05:47 2024

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