Magnesium in PDB 6f95: Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A

The binding sites of Magnesium atom in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A (pdb code 6f95). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A, PDB code: 6f95:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:57.1 occ:1.00 O2B A:ADP302 2.4 62.5 1.0 OE2 A:GLU151 2.6 75.4 1.0 O3B A:ADP302 3.1 62.5 1.0 OD2 A:ASP8 3.2 65.8 1.0 PB A:ADP302 3.2 62.5 1.0 CD A:GLU151 3.8 75.4 1.0 O2A A:ADP302 4.0 62.5 1.0 CG A:ASP8 4.1 65.8 1.0 ND2 A:ASN258 4.2 66.2 1.0 OD1 A:ASP8 4.2 65.8 1.0 CG A:GLU151 4.3 75.4 1.0 O1B A:ADP302 4.3 62.5 1.0 OD2 A:ASP168 4.3 63.8 1.0 O3A A:ADP302 4.4 62.5 1.0 CA A:GLY10 4.5 62.2 1.0 NZ A:LYS15 4.7 60.8 1.0 OD1 A:ASP168 4.7 63.8 1.0 PA A:ADP302 4.8 62.5 1.0 OE1 A:GLU151 4.8 75.4 1.0 CG A:ASP168 4.9 63.8 1.0 NZ A:LYS79 5.0 93.5 1.0

Magnesium binding site 2 out of 5 in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:59.7 occ:1.00 O2B B:ADP302 2.4 60.6 1.0 OE2 B:GLU151 2.6 73.7 1.0 O3B B:ADP302 3.1 60.6 1.0 PB B:ADP302 3.2 60.6 1.0 OD2 B:ASP8 3.4 66.8 1.0 CD B:GLU151 3.8 73.7 1.0 O2A B:ADP302 4.0 60.6 1.0 OD2 B:ASP168 4.2 63.9 1.0 ND2 B:ASN258 4.2 64.5 1.0 O1B B:ADP302 4.3 60.6 1.0 CG B:GLU151 4.3 73.7 1.0 CG B:ASP8 4.3 66.8 1.0 OD1 B:ASP8 4.4 66.8 1.0 O3A B:ADP302 4.4 60.6 1.0 CA B:GLY10 4.5 60.6 1.0 OD1 B:ASP168 4.7 63.9 1.0 PA B:ADP302 4.8 60.6 1.0 OE1 B:GLU151 4.8 73.7 1.0 NZ B:LYS15 4.8 59.9 1.0 CG B:ASP168 4.9 63.9 1.0 NZ B:LYS79 5.0 92.7 1.0

Magnesium binding site 3 out of 5 in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:55.5 occ:1.00 OE2 C:GLU151 2.3 75.5 1.0 O2B C:ADP302 2.4 61.4 1.0 O3B C:ADP302 3.1 61.4 1.0 PB C:ADP302 3.2 61.4 1.0 OD2 C:ASP8 3.3 67.5 1.0 CD C:GLU151 3.5 75.5 1.0 O2A C:ADP302 4.0 61.4 1.0 CG C:GLU151 4.1 75.5 1.0 CG C:ASP8 4.1 67.5 1.0 OD1 C:ASP8 4.2 67.5 1.0 O1B C:ADP302 4.3 61.4 1.0 CA C:GLY10 4.3 61.5 1.0 OD2 C:ASP168 4.3 65.3 1.0 ND2 C:ASN258 4.4 64.7 1.0 O3A C:ADP302 4.4 61.4 1.0 OE1 C:GLU151 4.5 75.5 1.0 NZ C:LYS79 4.6 89.6 1.0 PA C:ADP302 4.8 61.4 1.0 O C:ILE9 4.9 66.0 1.0 OD1 C:ASP168 4.9 65.3 1.0 NZ C:LYS15 4.9 59.9 1.0 N C:GLY10 5.0 61.5 1.0

Magnesium binding site 4 out of 5 in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:63.9 occ:1.00 O2B D:ADP302 2.4 67.3 1.0 OE2 D:GLU151 2.4 82.5 1.0 O3B D:ADP302 3.1 67.3 1.0 PB D:ADP302 3.2 67.3 1.0 OD2 D:ASP8 3.2 75.0 1.0 CD D:GLU151 3.5 82.5 1.0 CG D:GLU151 4.0 82.5 1.0 ND2 D:ASN258 4.0 74.7 1.0 O2A D:ADP302 4.0 67.3 1.0 OD2 D:ASP168 4.0 76.1 1.0 CG D:ASP8 4.1 75.0 1.0 OD1 D:ASP8 4.1 75.0 1.0 O1B D:ADP302 4.3 67.3 1.0 O3A D:ADP302 4.4 67.3 1.0 OD1 D:ASP168 4.6 76.1 1.0 OE1 D:GLU151 4.6 82.5 1.0 CA D:GLY10 4.7 67.1 1.0 CG D:ASP168 4.7 76.1 1.0 PA D:ADP302 4.8 67.3 1.0 NZ D:LYS79 4.9 93.5 1.0 NZ D:LYS15 5.0 68.1 1.0 CG D:ASN258 5.0 74.7 1.0

Magnesium binding site 5 out of 5 in the Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Alfa From B. Subtilis Plasmid PLS32 Filament Structure at 3.4 A within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:55.4 occ:1.00 O2B E:ADP302 2.4 67.7 1.0 OE2 E:GLU151 2.7 77.3 1.0 OD2 E:ASP8 3.0 72.8 1.0 O3B E:ADP302 3.1 67.7 1.0 PB E:ADP302 3.2 67.7 1.0 ND2 E:ASN258 3.8 70.2 1.0 CD E:GLU151 3.8 77.3 1.0 CG E:ASP8 3.8 72.8 1.0 OD1 E:ASP8 3.9 72.8 1.0 O2A E:ADP302 4.0 67.7 1.0 OD2 E:ASP168 4.1 65.6 1.0 CG E:GLU151 4.1 77.3 1.0 O1B E:ADP302 4.3 67.7 1.0 O3A E:ADP302 4.4 67.7 1.0 OD1 E:ASP168 4.6 65.6 1.0 NZ E:LYS15 4.7 67.6 1.0 CG E:ASN258 4.8 70.2 1.0 PA E:ADP302 4.8 67.7 1.0 CA E:GLY10 4.8 68.4 1.0 CG E:ASP168 4.8 65.6 1.0 OE1 E:GLU151 4.9 77.3 1.0 CB E:ASN258 4.9 70.2 1.0

A.Szewczak-Harris, J.Lowe. Cryo-Em Reconstruction of Alfa Frombacillus Subtilisreveals the Structure of A Simplified Actin-Like Filament at 3.4- Angstrom Resolution. Proc. Natl. Acad. Sci. V. 115 3458 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29440489
DOI: 10.1073/PNAS.1716424115