Magnesium in PDB 6g7z: Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop

The structure of Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop, PDB code: 6g7z was solved by B.Masquida, M.Meyer, V.Olieric, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.40 / 3.34
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.945, 88.791, 110.038, 90.00, 90.00, 90.00
R / Rfree (%)	23.5 / 30.4

The binding sites of Magnesium atom in the Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop (pdb code 6g7z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop, PDB code: 6g7z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:57.7 occ:1.00 O A:HOH301 2.2 70.3 1.0 O A:HOH305 2.2 48.8 1.0 O A:HOH310 2.2 65.8 1.0 O A:HOH309 2.2 65.6 1.0 O A:HOH302 2.2 53.2 1.0 OP1 A:G131 2.9 61.2 1.0 O6 A:G96 3.5 66.6 1.0 O6 A:G95 3.6 67.8 1.0 P A:G131 3.9 68.1 1.0 OP2 A:G131 4.1 63.6 1.0 C6 A:G95 4.2 63.3 1.0 C6 A:G96 4.5 59.9 1.0 N7 A:G95 4.5 81.8 1.0 O3' A:C130 4.6 82.8 1.0 C5 A:G95 4.7 81.1 1.0 N7 A:G96 4.7 87.0 1.0 C8 A:G131 5.0 73.5 1.0

Magnesium binding site 2 out of 2 in the Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:53.5 occ:1.00 O A:HOH308 2.2 60.6 1.0 O A:HOH303 2.2 57.2 1.0 O A:HOH304 2.2 53.7 1.0 O A:HOH306 2.2 54.2 1.0 O A:HOH311 2.2 53.6 1.0 O A:HOH307 2.2 53.0 1.0 O4 A:U121 3.8 58.8 1.0 N7 A:G120 4.2 56.3 1.0 O2 A:C130 4.7 75.0 1.0 O6 A:G129 4.8 79.1 1.0 C4 A:U121 4.8 63.3 1.0 O6 A:G120 4.9 63.4 1.0 C8 A:G120 5.0 67.9 1.0

B.Masquida, M.Meyer, V.Olieric. Lariat-Capping Ribozyme with A Shortened DP2 Stem Loop To Be Published.