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Magnesium in PDB 6ge8: Crystal Structure of Mycobacterium Tuberculosis Bioa

Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Bioa

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Bioa:
2.6.1.62;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Tuberculosis Bioa, PDB code: 6ge8 was solved by A.Ekstrom, D.J.Campopiano, J.Marles-Wright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.85 / 1.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.748, 66.559, 202.504, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Tuberculosis Bioa (pdb code 6ge8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mycobacterium Tuberculosis Bioa, PDB code: 6ge8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6ge8

Go back to Magnesium Binding Sites List in 6ge8
Magnesium binding site 1 out of 2 in the Crystal Structure of Mycobacterium Tuberculosis Bioa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Bioa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:74.4
occ:1.00
O A:HOH659 2.2 32.6 1.0
O A:HOH660 2.3 78.5 1.0
O A:HOH729 2.4 63.7 1.0
O A:VAL108 2.7 36.9 1.0
O A:HOH606 2.7 65.0 1.0
O A:HOH755 2.8 58.1 1.0
HA A:ALA113 3.3 67.3 1.0
HG13 A:VAL108 3.3 58.1 1.0
H A:GLY114 3.4 44.6 1.0
O A:LEU115 3.8 34.0 1.0
C A:VAL108 3.8 41.1 1.0
HA A:ASP109 3.9 52.0 1.0
H A:LEU115 4.0 37.1 1.0
N A:GLY114 4.1 37.2 1.0
HG12 A:VAL108 4.1 58.1 1.0
CG1 A:VAL108 4.1 48.4 1.0
CA A:ALA113 4.2 56.1 1.0
O A:THR111 4.2 33.3 1.0
O A:PRO112 4.2 34.3 1.0
HA A:VAL108 4.5 38.6 1.0
N A:LEU115 4.5 30.9 1.0
C A:LEU115 4.6 33.0 1.0
C A:ALA113 4.6 42.9 1.0
CA A:ASP109 4.6 43.4 1.0
HG1 A:THR111 4.7 33.6 1.0
HG11 A:VAL108 4.7 58.1 1.0
CA A:VAL108 4.7 32.1 1.0
N A:ASP109 4.7 29.0 1.0
O A:ASP109 4.8 40.8 1.0
C A:PRO112 4.8 32.6 1.0
HB2 A:LEU115 4.9 38.1 1.0
C A:ASP109 4.9 35.4 1.0
HA A:ASP116 4.9 51.7 1.0
OG1 A:THR111 4.9 28.0 1.0
N A:ALA113 4.9 35.2 1.0
HB3 A:ASP116 4.9 86.3 1.0

Magnesium binding site 2 out of 2 in 6ge8

Go back to Magnesium Binding Sites List in 6ge8
Magnesium binding site 2 out of 2 in the Crystal Structure of Mycobacterium Tuberculosis Bioa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mycobacterium Tuberculosis Bioa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:35.7
occ:1.00
HB2 B:CYS168 1.7 72.6 1.0
H B:HIS158 2.3 29.3 1.0
CB B:CYS168 2.6 60.5 1.0
HA B:MET165 3.0 34.2 1.0
O B:ALA164 3.0 30.8 1.0
N B:HIS158 3.1 24.4 1.0
O B:GLY159 3.1 29.4 1.0
HB3 B:CYS168 3.2 72.6 1.0
HA B:CYS168 3.2 44.6 1.0
HA B:TYR157 3.2 38.2 1.0
H B:GLY159 3.2 36.9 1.0
CA B:CYS168 3.3 37.1 1.0
H B:CYS168 3.3 38.5 1.0
HB2 B:HIS158 3.4 30.7 1.0
N B:CYS168 3.5 32.0 1.0
HD1 B:TYR157 3.5 44.5 1.0
N B:GLY159 3.6 30.7 1.0
SG B:CYS168 3.7 60.1 1.0
CD1 B:TYR157 3.8 37.1 1.0
C B:ALA164 3.8 24.1 1.0
CA B:MET165 3.9 28.5 1.0
CA B:HIS158 3.9 23.1 1.0
CA B:TYR157 4.0 31.8 1.0
C B:HIS158 4.0 22.7 1.0
C B:TYR157 4.0 33.4 1.0
CB B:HIS158 4.1 25.6 1.0
C B:GLY159 4.1 35.8 1.0
CE1 B:TYR157 4.2 34.3 1.0
HE1 B:TYR157 4.2 41.2 1.0
N B:MET165 4.2 22.3 1.0
HD2 B:HIS158 4.2 51.8 1.0
HB1 B:ALA164 4.2 37.8 1.0
O B:MET165 4.3 24.9 1.0
HG13 B:ILE167 4.3 34.7 1.0
C B:MET165 4.4 35.5 1.0
CG B:TYR157 4.4 41.0 1.0
C B:ILE167 4.4 36.5 1.0
CA B:GLY159 4.5 31.7 1.0
HG2 B:MET165 4.6 61.9 1.0
H B:ILE167 4.6 33.5 1.0
C B:CYS168 4.8 36.1 1.0
CB B:TYR157 4.8 34.0 1.0
HG B:CYS168 4.8 72.2 1.0
HA B:HIS158 4.8 27.7 1.0
CD2 B:HIS158 4.8 43.2 1.0
CG B:HIS158 4.8 28.2 1.0
HB3 B:HIS158 4.8 30.7 1.0
O B:HIS158 4.9 28.2 1.0
H B:MET165 4.9 26.7 1.0
CA B:ALA164 4.9 31.9 1.0
CB B:ALA164 4.9 31.5 1.0
O B:GLY156 4.9 26.7 1.0
O B:ILE167 4.9 31.5 1.0

Reference:

J.Marles-Wright, A.Ekstrom, D.J.Campopiano, J.Marles-Wright. N/A N/A.
Page generated: Tue Oct 1 01:06:17 2024

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