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Magnesium in PDB 6go6: Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna

Enzymatic activity of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna

All present enzymatic activity of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna:
2.7.7.31; 2.7.7.7;

Protein crystallography data

The structure of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna, PDB code: 6go6 was solved by J.Loc'h, C.A.Gerodimos, S.Rosario, M.R.Lieber, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.46 / 2.09
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.420, 189.830, 46.480, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 23.2

Other elements in 6go6:

The structure of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna (pdb code 6go6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna, PDB code: 6go6:

Magnesium binding site 1 out of 1 in 6go6

Go back to Magnesium Binding Sites List in 6go6
Magnesium binding site 1 out of 1 in the Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:44.5
occ:1.00
 OD1 A:ASP343 2.0 50.5 1.0
O1G A:DCT603 2.1 48.8 1.0
O A:HOH779 2.1 41.2 1.0
OD2 A:ASP345 2.2 50.3 1.0
O1B A:DCT603 2.2 40.7 1.0
O2A A:DCT603 2.3 43.7 1.0
CG A:ASP343 3.2 49.7 1.0
PB A:DCT603 3.3 42.7 1.0
CG A:ASP345 3.3 47.2 1.0
PG A:DCT603 3.4 47.7 1.0
PA A:DCT603 3.5 41.7 1.0
O3A A:DCT603 3.6 44.4 1.0
O3B A:DCT603 3.6 47.0 1.0
OD1 A:ASP345 3.7 49.1 1.0
OD2 A:ASP343 3.7 50.6 1.0
O A:ASP343 4.0 42.8 1.0
O3G A:DCT603 4.1 46.4 1.0
O A:HOH732 4.1 41.5 1.0
ND1 A:HIS342 4.1 48.5 0.5
O A:HOH705 4.2 50.3 1.0
C A:ASP343 4.3 44.5 1.0
CE1 A:HIS342 4.3 47.8 0.5
N A:GLY333 4.3 36.1 1.0
O5' A:DCT603 4.4 42.0 1.0
C5' A:DCT603 4.4 38.5 1.0
CB A:ASP343 4.4 42.0 1.0
N A:ASP343 4.5 40.8 1.0
O2G A:DCT603 4.5 52.8 1.0
CB A:ASP345 4.5 44.1 1.0
O1A A:DCT603 4.6 41.4 1.0
O2B A:DCT603 4.6 42.0 1.0
CA A:ASP343 4.6 40.6 1.0
CA A:GLY332 4.7 39.1 1.0
N A:ASP345 4.8 42.9 1.0
N A:VAL344 4.9 42.2 1.0

Reference:

J.Loc'h, C.A.Gerodimos, S.Rosario, M.R.Lieber, M.Delarue. Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna To Be Published.
Page generated: Wed Aug 13 06:39:57 2025

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