Magnesium in PDB 6hbs: Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein

The structure of Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein, PDB code: 6hbs was solved by D.J.Campopiano, A.Serpico, J.Marles-Wright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.83 / 1.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.180, 104.419, 65.250, 90.00, 109.26, 90.00
R / Rfree (%)	16.9 / 20.2

The binding sites of Magnesium atom in the Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein (pdb code 6hbs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein, PDB code: 6hbs:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:27.4 occ:1.00 O A:VAL103 2.2 22.7 1.0 O A:ALA109 2.4 23.7 1.0 O A:VAL106 2.4 21.6 1.0 O A:HOH779 2.4 26.5 1.0 O A:HOH852 2.4 28.6 1.0 O A:HOH655 2.6 37.9 1.0 C A:VAL106 3.4 22.2 1.0 C A:VAL103 3.4 23.1 1.0 C A:ALA109 3.5 21.5 1.0 CG1 A:VAL103 3.8 23.6 1.0 O A:ARG107 3.9 27.0 1.0 N A:ALA109 3.9 23.5 1.0 C A:ARG107 4.0 26.1 1.0 CA A:ARG107 4.0 26.5 1.0 N A:ARG107 4.1 23.2 1.0 CA A:ALA109 4.2 23.7 1.0 CA A:VAL103 4.3 21.8 1.0 N A:VAL106 4.3 22.3 1.0 N A:GLY104 4.3 22.0 1.0 CA A:GLY104 4.4 22.4 1.0 CA A:VAL106 4.4 22.0 1.0 C A:GLY104 4.4 24.1 1.0 O A:HOH641 4.5 26.9 1.0 CB A:ALA109 4.5 23.9 1.0 O A:GLY104 4.5 25.5 1.0 O A:HOH665 4.5 47.7 1.0 N A:ASP110 4.6 21.8 1.0 CB A:VAL103 4.7 22.0 1.0 O A:HOH873 4.7 36.1 1.0 N A:HIS108 4.8 24.2 1.0 C A:HIS108 4.9 23.6 1.0

Magnesium binding site 2 out of 2 in the Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:24.8 occ:1.00 O B:VAL103 2.3 21.2 1.0 O B:HOH813 2.3 27.8 1.0 O B:VAL106 2.4 22.3 1.0 O B:ALA109 2.4 21.8 1.0 O B:HOH846 2.5 26.2 1.0 O B:HOH604 2.7 40.6 1.0 C B:VAL106 3.4 23.7 1.0 C B:VAL103 3.4 21.7 1.0 C B:ALA109 3.6 22.0 1.0 O B:ARG107 3.8 26.5 1.0 CG1 B:VAL103 3.9 19.5 1.0 N B:ALA109 3.9 22.8 1.0 C B:ARG107 4.0 24.8 1.0 CA B:ARG107 4.0 27.7 1.0 N B:ARG107 4.1 24.1 1.0 CA B:ALA109 4.2 22.6 1.0 N B:VAL106 4.2 21.4 1.0 CA B:VAL103 4.3 20.8 1.0 N B:GLY104 4.3 22.6 1.0 CA B:VAL106 4.4 22.0 1.0 CA B:GLY104 4.4 22.4 1.0 C B:GLY104 4.5 22.9 1.0 O B:HOH692 4.5 25.5 1.0 O B:GLY104 4.5 20.9 1.0 CB B:ALA109 4.6 23.8 1.0 O B:HOH724 4.6 45.8 1.0 N B:ASP110 4.7 21.4 1.0 CB B:VAL103 4.7 19.4 1.0 O B:HOH863 4.7 38.1 1.0 N B:HIS108 4.8 22.8 1.0 C B:HIS108 4.9 22.6 1.0 CB B:VAL106 5.0 22.3 1.0

D.J.Campopiano, A.Serpico, J.Marles-Wright. Structure of Plp Internal Aldimine Form of Sphingopyxis Sp. MTA144 Fumi Protein To Be Published.