Magnesium in PDB 6hcn: Adenovirus Type 5 Fiber Knob Protein at 1.49A Resolution

The structure of Adenovirus Type 5 Fiber Knob Protein at 1.49A Resolution, PDB code: 6hcn was solved by P.J.Rizkallah, A.L.Parker, A.T.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.56 / 1.49
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	102.160, 102.440, 77.010, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 23.3

The binding sites of Magnesium atom in the Adenovirus Type 5 Fiber Knob Protein at 1.49A Resolution (pdb code 6hcn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Adenovirus Type 5 Fiber Knob Protein at 1.49A Resolution, PDB code: 6hcn:

Magnesium binding site 1 out of 1 in the Adenovirus Type 5 Fiber Knob Protein at 1.49A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adenovirus Type 5 Fiber Knob Protein at 1.49A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:40.8 occ:1.00 OE1 A:GLN519 2.4 34.1 1.0 OE1 C:GLN519 2.4 32.0 1.0 O A:HOH803 2.5 37.5 1.0 O C:HOH823 2.5 32.8 1.0 O B:HOH677 2.5 34.4 1.0 OE1 B:GLN519 2.7 38.2 1.0 O B:HOH603 3.2 36.5 1.0 CD C:GLN519 3.5 29.6 1.0 CD A:GLN519 3.5 31.8 1.0 CD B:GLN519 3.8 34.5 1.0 CG C:GLN519 4.0 28.7 1.0 CG A:GLN519 4.1 29.0 1.0 O C:HOH758 4.2 32.8 1.0 CB C:GLN519 4.3 26.5 1.0 O A:HOH770 4.3 35.1 1.0 CG B:GLN519 4.3 33.4 1.0 CB A:GLN519 4.3 27.4 1.0 O B:HOH646 4.3 41.9 1.0 OH A:TYR521 4.4 31.4 1.0 NE2 C:GLN519 4.6 31.6 1.0 NE2 A:GLN519 4.6 33.2 1.0 OH C:TYR521 4.6 33.7 1.0 CB B:GLN519 4.7 31.8 1.0 OH B:TYR521 4.8 32.0 1.0 O A:HOH830 4.8 40.4 1.0 N C:GLN519 4.9 24.2 1.0 NE2 B:GLN519 4.9 36.4 1.0

A.T.Baker, A.Greenshields-Watson, L.Coughlan, J.A.Davies, H.Uusi-Kerttula, D.K.Cole, P.J.Rizkallah, A.L.Parker. Diversity Within the Adenovirus Fiber Knob Hypervariable Loops Influences Primary Receptor Interactions. Nat Commun V. 10 741 2019.
ISSN: ESSN 2041-1723
PubMed: 30765704
DOI: 10.1038/S41467-019-08599-Y