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Magnesium in PDB 6hdk: R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A.

Enzymatic activity of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A.

All present enzymatic activity of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A.:
5.4.2.6;

Protein crystallography data

The structure of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A., PDB code: 6hdk was solved by A.J.Robertson, C.Bisson, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.17 / 1.24
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.230, 54.290, 104.240, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 16.7

Other elements in 6hdk:

The structure of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A. also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom
Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A. (pdb code 6hdk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A., PDB code: 6hdk:

Magnesium binding site 1 out of 1 in 6hdk

Go back to Magnesium Binding Sites List in 6hdk
Magnesium binding site 1 out of 1 in the R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Aluminium Tetrafluoride and Beta-G6P to 1.2 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg307

b:8.9
occ:1.00
 F3 A:ALF301 2.0 8.5 1.0
OD1 A:ASP170 2.0 8.9 1.0
OD2 A:ASP8 2.0 9.1 1.0
O A:ASP10 2.0 9.2 1.0
O A:HOH425 2.1 9.7 1.0
O A:HOH449 2.1 9.9 1.0
CG A:ASP170 3.0 9.3 1.0
CG A:ASP8 3.0 8.5 1.0
C A:ASP10 3.2 8.5 1.0
OD2 A:ASP170 3.3 10.0 1.0
OD1 A:ASP8 3.4 8.6 1.0
AL A:ALF301 3.5 8.8 1.0
F2 A:ALF301 3.6 9.3 1.0
O2 A:BG6308 3.8 8.9 1.0
CA A:ASP10 4.0 8.1 1.0
OE1 A:GLU169 4.0 14.0 1.0
N A:ASP10 4.0 8.3 1.0
CB A:ASP10 4.1 8.3 1.0
F1 A:ALF301 4.2 8.8 1.0
N A:GLY11 4.3 8.2 1.0
CB A:ASP8 4.3 9.0 1.0
CB A:ASP170 4.4 9.5 1.0
N A:ASP170 4.5 9.9 1.0
CA A:GLY11 4.5 9.2 1.0
O1 A:BG6308 4.6 8.7 1.0
O A:HOH512 4.6 10.9 1.0
C A:LEU9 4.7 8.6 1.0
CD A:GLU169 4.8 12.5 1.0
CG2 A:VAL12 4.8 10.3 1.0
CB A:SER171 4.8 11.3 1.0
CA A:ASP170 4.9 10.0 1.0
C2 A:BG6308 4.9 8.7 1.0
OG A:SER171 4.9 13.1 1.0
C A:GLY11 4.9 8.7 1.0
N A:SER171 5.0 10.9 1.0
OE2 A:GLU169 5.0 12.8 1.0
N A:GLY46 5.0 9.2 1.0

Reference:

A.J.Robertson, C.Bisson, J.P.Waltho. Transition State of Phospho-Enzyme Hydrolysis in Beta-Phosphoglucomutase. To Be Published.
Page generated: Wed Aug 13 06:57:45 2025

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