Magnesium in PDB 6hma: Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 237;

Binding sites:

The binding sites of Magnesium atom in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit (pdb code 6hma). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 237 binding sites of Magnesium where determined in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit, PDB code: 6hma:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:69.0 occ:1.00 OP2 A:G15 2.1 62.7 1.0 OP2 A:A14 2.2 64.8 1.0 P A:G15 3.6 62.7 1.0 P A:A14 3.7 64.8 1.0 C5' A:A14 4.2 64.8 1.0 O5' A:A14 4.3 64.8 1.0 C5' A:G15 4.3 62.7 1.0 OP1 A:G15 4.3 62.7 1.0 OP1 A:A14 4.4 64.8 1.0 O3' A:A14 4.4 64.8 1.0 O5' A:G15 4.4 62.7 1.0 C3' A:A14 4.6 64.8 1.0 O3' A:A13 4.7 67.8 1.0

Magnesium binding site 2 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3002 b:55.1 occ:1.00 O6 A:G520 4.3 65.5 1.0 O6 A:G30 4.4 61.7 1.0 N4 A:C31 4.7 62.5 1.0 O4 A:U29 4.7 59.9 1.0 C5 A:U29 4.8 59.9 1.0 OP2 A:U29 4.8 59.9 1.0 OP2 A:A493 4.9 59.7 1.0 OP2 A:A28 5.0 57.9 1.0

Magnesium binding site 3 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3003 b:62.9 occ:1.00 OP1 A:C31 2.6 62.5 1.0 P A:C31 3.9 62.5 1.0 OP1 A:C1277 3.9 68.0 1.0 OP1 A:G1278 4.3 69.5 1.0 OP1 A:C1239 4.3 62.5 1.0 OP1 A:U1238 4.4 62.3 1.0 OP2 A:C31 4.4 62.5 1.0 O3' A:G30 4.4 61.7 1.0 O3' A:C1277 4.7 68.0 1.0 OP2 A:C1239 4.7 62.5 1.0 P A:C1239 4.8 62.5 1.0 O3' A:U1238 5.0 62.3 1.0 P A:G1278 5.0 69.5 1.0

Magnesium binding site 4 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3004 b:85.3 occ:1.00 C5' A:G45 3.3 88.6 1.0 C8 A:G218 3.8 85.7 1.0 OP2 A:G218 3.8 85.7 1.0 O2' A:C46 3.8 87.0 1.0 C3' A:G45 4.0 88.6 1.0 O5' A:G45 4.0 88.6 1.0 OP1 A:G45 4.0 88.6 1.0 N7 A:G218 4.1 85.7 1.0 C4' A:G45 4.2 88.6 1.0 C2' A:C46 4.2 87.0 1.0 C2' A:G45 4.3 88.6 1.0 O5' A:G218 4.3 85.7 1.0 P A:G45 4.5 88.6 1.0 C3' A:C46 4.5 87.0 1.0 P A:G218 4.6 85.7 1.0 OP2 A:G45 4.9 88.6 1.0 N9 A:G218 4.9 85.7 1.0

Magnesium binding site 5 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3005 b:80.1 occ:1.00 N7 A:G80 4.0 91.1 1.0 O6 A:G82 4.0 90.7 1.0 O6 A:G80 4.4 91.1 1.0 O6 A:G81 4.4 90.6 1.0 N7 A:G81 4.5 90.6 1.0 C5 A:G80 4.8 91.1 1.0 OP1 A:A102 4.8 94.7 1.0 C6 A:G82 4.8 90.7 1.0 C8 A:G80 4.9 91.1 1.0 C6 A:G80 4.9 91.1 1.0

Magnesium binding site 6 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3006 b:69.5 occ:1.00 OP2 A:U119 2.1 73.9 1.0 P A:U119 3.5 73.9 1.0 O6 A:G122 4.0 68.4 1.0 O3' A:A118 4.1 68.5 1.0 O6 A:G121 4.3 73.4 1.0 OP1 A:U119 4.3 73.9 1.0 N7 A:G121 4.5 73.4 1.0 O5' A:U119 4.5 73.9 1.0 N7 A:G122 4.7 68.4 1.0 C5' A:U119 4.8 73.9 1.0 OP1 A:G120 4.9 77.5 1.0 C6 A:G122 4.9 68.4 1.0 C6 A:G121 4.9 73.4 1.0

Magnesium binding site 7 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3007 b:77.0 occ:1.00 OP2 A:G120 2.1 77.5 1.0 P A:G120 3.4 77.5 1.0 OP2 A:U149 3.6 88.8 1.0 O3' A:U119 3.7 73.9 1.0 OP2 A:A150 4.0 81.1 1.0 O6 A:G51 4.2 73.5 1.0 O2' A:U119 4.3 73.9 1.0 OP1 A:G120 4.3 77.5 1.0 O5' A:G120 4.5 77.5 1.0 P A:U149 4.7 88.8 1.0 C5' A:G120 4.7 77.5 1.0 C3' A:U119 4.9 73.9 1.0 O5' A:U149 5.0 88.8 1.0

Magnesium binding site 8 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3008 b:91.3 occ:1.00 OP2 A:A178 1.9 88.4 1.0 OP2 A:G177 2.4 96.0 1.0 P A:A178 3.4 88.4 1.0 P A:G177 3.6 96.0 1.0 O3' A:A176 3.7 0.2 1.0 OP1 A:A178 4.2 88.4 1.0 O3' A:G177 4.3 96.0 1.0 O5' A:A178 4.3 88.4 1.0 C3' A:G177 4.3 96.0 1.0 N1 A:A179 4.4 81.7 1.0 O2' A:A176 4.5 0.2 1.0 O5' A:G177 4.6 96.0 1.0 O2' A:A49 4.7 75.4 1.0 OP1 A:G177 4.7 96.0 1.0 C3' A:A176 4.8 0.2 1.0 C2' A:A49 4.9 75.4 1.0 N6 A:A179 4.9 81.7 1.0

Magnesium binding site 9 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3009 b:78.5 occ:1.00 N7 A:G180 4.0 76.6 1.0 O6 A:G181 4.1 78.5 1.0 OP1 A:A179 4.3 81.7 1.0 OP2 A:A216 4.4 84.5 1.0 O6 A:G180 4.6 76.6 1.0 OP2 A:G215 4.7 80.5 1.0 N7 A:G181 4.8 78.5 1.0 C8 A:G180 4.9 76.6 1.0 C5 A:G180 4.9 76.6 1.0 OP1 A:G215 4.9 80.5 1.0

Magnesium binding site 10 out of 237 in the Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3010 b:66.8 occ:1.00 OP2 A:A191 3.9 69.1 1.0 O6 A:G192 4.4 64.3 1.0 OP2 A:G190 4.4 71.8 1.0 N7 A:G192 4.6 64.3 1.0 N7 A:A191 4.6 69.1 1.0 N7 A:G208 4.6 62.4 1.0 C8 A:A191 5.0 69.1 1.0

Z.Eyal, G.Cimicata. Improved Model Derived From Cryo-Em Map of Staphylococcus Aureus Large Ribosomal Subunit To Be Published.