Magnesium in PDB 6hq7: Structure of Eal Enzyme BD1971 - Cgmp Bound Form

The structure of Structure of Eal Enzyme BD1971 - Cgmp Bound Form, PDB code: 6hq7 was solved by A.L.Lovering, I.T.Cadby, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.15 / 2.46
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	82.570, 82.570, 134.590, 90.00, 90.00, 120.00
R / Rfree (%)	22.1 / 25.3

The binding sites of Magnesium atom in the Structure of Eal Enzyme BD1971 - Cgmp Bound Form (pdb code 6hq7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Eal Enzyme BD1971 - Cgmp Bound Form, PDB code: 6hq7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Eal Enzyme BD1971 - Cgmp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Eal Enzyme BD1971 - Cgmp Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:85.5 occ:1.00 OD1 A:ASP306 2.4 98.9 1.0 OE2 A:GLU178 2.4 72.5 1.0 OE1 A:GLU277 2.5 95.2 1.0 OD2 A:ASP306 3.1 93.0 1.0 CG A:ASP306 3.1 89.0 1.0 CD A:GLU178 3.2 69.2 1.0 OD1 A:ASN245 3.3 62.9 1.0 OE1 A:GLU178 3.3 70.1 1.0 NZ A:LYS327 3.7 78.3 1.0 CD A:GLU277 3.7 93.2 1.0 CG A:ASN245 4.2 62.1 1.0 OE2 A:GLU277 4.3 94.9 1.0 CD A:LYS327 4.3 79.3 1.0 CE A:LYS327 4.4 82.5 1.0 ND2 A:ASN245 4.4 59.1 1.0 CG A:GLU178 4.5 68.8 1.0 CB A:ASP306 4.6 87.8 1.0 OE1 A:GLU363 4.8 91.1 1.0 CG A:GLU277 4.9 89.3 1.0 O A:ASP306 4.9 95.9 1.0

Magnesium binding site 2 out of 2 in the Structure of Eal Enzyme BD1971 - Cgmp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Eal Enzyme BD1971 - Cgmp Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg902 b:81.9 occ:1.00 OE2 B:GLU178 2.6 81.5 1.0 OD1 B:ASP306 2.7 77.6 1.0 OE1 B:GLU277 2.7 80.1 1.0 OD2 B:ASP306 2.8 88.6 1.0 CG B:ASP306 3.1 79.3 1.0 OE1 B:GLU178 3.2 74.6 1.0 CD B:GLU178 3.2 73.4 1.0 ND2 B:ASN245 3.5 55.5 1.0 NZ B:LYS327 3.5 71.1 1.0 CD B:GLU277 3.8 82.4 1.0 CE B:LYS327 4.2 72.9 1.0 CD B:LYS327 4.3 75.3 1.0 OE2 B:GLU277 4.3 84.4 1.0 CG B:ASN245 4.5 60.3 1.0 CB B:ASP306 4.6 74.8 1.0 OE1 B:GLU363 4.6 99.7 1.0 CG B:GLU178 4.6 72.1 1.0 OD1 B:ASP307 4.7 87.2 1.0 OD1 B:ASN245 4.7 61.6 1.0

I.T.Cadby, S.M.Basford, R.Nottingham, R.Meek, R.Lowry, C.Lambert, M.Tridgett, R.Till, R.Ahmad, R.Fung, L.Hobley, W.S.Hughes, P.J.Moynihan, R.E.Sockett, A.L.Lovering. Nucleotide Signaling Pathway Convergence in A Camp-Sensing Bacterial C-Di-Gmp Phosphodiesterase. Embo J. V. 38 00772 2019.
ISSN: ESSN 1460-2075
PubMed: 31355487
DOI: 10.15252/EMBJ.2018100772