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Magnesium in PDB 6hsn: Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide

Enzymatic activity of Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide

All present enzymatic activity of Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide, PDB code: 6hsn was solved by V.B.Kasaragod, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.55
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 86.962, 99.217, 111.608, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 19.6

Other elements in 6hsn:

The structure of Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide (pdb code 6hsn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide, PDB code: 6hsn:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6hsn

Go back to Magnesium Binding Sites List in 6hsn
Magnesium binding site 1 out of 2 in the Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:21.8
occ:1.00
O2A A:ADP801 2.0 18.7 1.0
O A:HOH1076 2.1 21.4 1.0
O A:HOH1022 2.1 18.6 1.0
O A:HOH971 2.1 23.2 1.0
O A:HOH932 2.1 22.4 1.0
O A:HOH1194 2.2 22.3 1.0
PA A:ADP801 3.2 21.5 1.0
H A:GLY573 3.4 20.8 1.0
O1A A:ADP801 3.7 22.3 1.0
O5' A:ADP801 3.8 20.8 1.0
HA2 A:GLY507 3.8 20.3 1.0
HA3 A:GLY507 3.9 20.3 1.0
OE2 A:GLU509 3.9 26.7 1.0
H2' A:ADP801 4.0 21.3 1.0
H8 A:ADP801 4.0 17.9 1.0
OD1 A:ASP549 4.0 28.4 1.0
N A:GLY573 4.1 20.6 1.0
O A:THR506 4.1 20.1 1.0
HA3 A:GLY572 4.1 18.2 1.0
OE1 A:GLU509 4.2 21.3 1.0
OD1 A:ASP580 4.3 28.7 1.0
HA2 A:GLY573 4.3 21.9 1.0
CA A:GLY507 4.3 19.9 1.0
OD2 A:ASP549 4.3 25.8 1.0
CD A:GLU509 4.4 23.5 1.0
O3A A:ADP801 4.5 21.9 1.0
CG A:ASP549 4.6 24.3 1.0
HA2 A:GLY572 4.7 18.2 1.0
CA A:GLY573 4.7 22.8 1.0
OG1 A:THR506 4.7 21.1 1.0
CA A:GLY572 4.8 18.0 1.0
C A:THR506 4.8 21.5 1.0
C8 A:ADP801 4.8 17.3 1.0
C A:GLY572 4.9 19.4 1.0
HG1 A:THR506 4.9 21.2 0.0
HA3 A:GLY573 4.9 21.9 1.0
C2' A:ADP801 4.9 21.7 1.0
MG A:MG803 4.9 25.7 1.0
N A:GLY507 5.0 19.6 1.0

Magnesium binding site 2 out of 2 in 6hsn

Go back to Magnesium Binding Sites List in 6hsn
Magnesium binding site 2 out of 2 in the Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Ternary Complex of Gephe-Adp-Gaba(A) Receptor Derived Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:25.7
occ:1.00
O A:HOH1173 1.9 28.7 1.0
O1B A:ADP801 2.1 27.6 1.0
O1A A:ADP801 2.1 22.3 1.0
OD2 A:ASP580 2.1 27.2 1.0
OD1 A:ASP580 2.3 28.7 1.0
CG A:ASP580 2.5 28.2 1.0
HB2 A:SER575 2.9 31.3 1.0
PA A:ADP801 3.2 21.5 1.0
PB A:ADP801 3.3 24.8 1.0
H A:SER575 3.6 26.1 1.0
O3A A:ADP801 3.6 21.9 1.0
O3B A:ADP801 3.7 27.4 1.0
CB A:SER575 3.8 31.3 1.0
H A:GLY577 3.9 34.9 1.0
O2A A:ADP801 3.9 18.7 1.0
O A:HOH971 3.9 23.2 1.0
O A:HOH920 3.9 41.1 1.0
CB A:ASP580 4.0 27.8 1.0
HA3 A:GLY577 4.0 34.9 1.0
H A:GLY573 4.1 20.8 1.0
HG A:SER575 4.3 35.4 0.0
HA2 A:GLY573 4.3 21.9 1.0
HB3 A:ASP580 4.3 28.6 1.0
HB3 A:SER575 4.3 31.4 1.0
O A:HOH1224 4.4 34.1 1.0
N A:SER575 4.4 26.2 1.0
OG A:SER575 4.4 34.9 1.0
H5'2 A:ADP801 4.4 21.8 1.0
HB2 A:ASP580 4.4 28.7 1.0
O2B A:ADP801 4.5 29.4 1.0
O5' A:ADP801 4.5 20.8 1.0
CA A:SER575 4.5 28.1 1.0
H A:VAL574 4.6 21.6 1.0
N A:GLY577 4.6 33.9 1.0
CA A:GLY577 4.8 34.1 1.0
N A:GLY573 4.8 20.6 1.0
HA A:ASP580 4.9 31.6 1.0
O A:HOH1194 4.9 22.3 1.0
CA A:GLY573 4.9 22.8 1.0
C A:SER575 4.9 27.7 1.0
C5' A:ADP801 4.9 21.5 1.0
MG A:MG802 4.9 21.8 1.0

Reference:

V.B.Kasaragod, T.J.Hausrat, N.Schaefer, M.Kuhn, N.R.Christensen, I.Tessmer, H.M.Maric, K.L.Madsen, C.Sotriffer, C.Villmann, M.Kneussel, H.Schindelin. Elucidating the Molecular Basis For Inhibitory Neurotransmission Regulation By Artemisinins. Neuron V. 101 673 2019.
ISSN: ISSN 1097-4199
PubMed: 30704910
DOI: 10.1016/J.NEURON.2019.01.001
Page generated: Tue Oct 1 02:12:48 2024

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