Magnesium in PDB 6iii: Crystal Structure of An Uncharacterized Protein

The structure of Crystal Structure of An Uncharacterized Protein, PDB code: 6iii was solved by B.Li, Z.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.93 / 2.11
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	71.424, 71.424, 363.446, 90.00, 90.00, 120.00
R / Rfree (%)	20.6 / 25.3

The binding sites of Magnesium atom in the Crystal Structure of An Uncharacterized Protein (pdb code 6iii). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Uncharacterized Protein, PDB code: 6iii:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of An Uncharacterized Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Uncharacterized Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:42.9 occ:1.00 OD2 A:ASP256 2.0 46.2 1.0 O2 A:2PN501 2.1 48.1 1.0 O A:HOH640 2.1 35.6 1.0 O6 A:2PN501 2.2 42.7 1.0 OD1 A:ASN247 2.3 44.7 1.0 O1P A:AMP502 2.4 56.0 1.0 CG A:ASP256 3.0 44.8 1.0 CG A:ASN247 3.2 44.3 1.0 P1 A:2PN501 3.3 55.2 1.0 P2 A:2PN501 3.4 51.2 1.0 ND2 A:ASN247 3.5 40.6 1.0 P A:AMP502 3.6 69.7 1.0 O5' A:AMP502 3.7 60.7 1.0 O1 A:2PN501 3.8 68.3 1.0 CB A:ASP256 3.8 38.5 1.0 N1 A:2PN501 3.8 53.7 1.0 OD1 A:ASP256 4.0 51.6 1.0 OD2 A:ASP246 4.0 44.6 1.0 O5 A:2PN501 4.0 46.9 1.0 MG A:MG504 4.1 78.3 1.0 NH1 A:ARG177 4.1 37.5 1.0 O2P A:AMP502 4.1 65.2 1.0 OH A:TYR71 4.4 40.1 1.0 O4 A:2PN501 4.5 48.6 1.0 C3' A:AMP502 4.6 55.8 1.0 O3 A:2PN501 4.6 65.7 1.0 CB A:ASN247 4.6 35.9 1.0 C5' A:AMP502 4.8 56.0 1.0 O3P A:AMP502 4.9 59.7 1.0 C2' A:AMP502 5.0 57.7 1.0 O A:ASP246 5.0 45.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of An Uncharacterized Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Uncharacterized Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg504 b:78.3 occ:1.00 O1 A:2PN501 2.4 68.3 1.0 OD1 A:ASP256 2.4 51.6 1.0 OD2 A:ASP256 2.8 46.2 1.0 CG A:ASP256 3.0 44.8 1.0 O1P A:AMP502 3.4 56.0 1.0 P1 A:2PN501 3.6 55.2 1.0 O2 A:2PN501 3.7 48.1 1.0 MG A:MG503 4.1 42.9 1.0 NH1 A:ARG87 4.3 61.3 1.0 O3 A:2PN501 4.4 65.7 1.0 CB A:ASP256 4.5 38.5 1.0 P A:AMP502 4.6 69.7 1.0 NZ A:LYS107 4.6 53.0 1.0 CA A:GLY258 4.6 45.5 1.0 O3P A:AMP502 4.6 59.7 1.0 N1 A:2PN501 4.8 53.7 1.0 ND2 A:ASN247 4.9 40.6 1.0 N A:GLY258 4.9 44.1 1.0

B.Li, B.Li, Z.Yuan. N/A N/A.