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Magnesium in PDB 6iug: Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen (pdb code 6iug). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen, PDB code: 6iug:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6iug

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Magnesium binding site 1 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:0.1
occ:1.00
 O1B A:ADP401 2.1 0.2 1.0
O1A A:ADP401 2.2 0.2 1.0
PB A:ADP401 2.4 0.2 1.0
O2B A:ADP401 2.5 0.2 1.0
O3A A:ADP401 2.5 0.2 1.0
NZ A:LYS20 2.8 0.8 1.0
PA A:ADP401 2.9 0.2 1.0
O2A A:ADP401 3.9 0.2 1.0
O3B A:ADP401 3.9 0.2 1.0
OD2 A:ASP13 4.0 0.6 1.0
O5' A:ADP401 4.1 0.2 1.0
CE A:LYS20 4.2 0.8 1.0
O A:MET18 4.4 0.4 1.0
O A:LYS338 4.4 0.0 1.0
CA A:GLY15 4.6 0.9 1.0
CD A:LYS20 4.7 0.8 1.0
CG A:MET18 4.7 0.4 1.0
CG A:ASP13 4.8 0.6 1.0

Magnesium binding site 2 out of 5 in 6iug

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Magnesium binding site 2 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:0.9
occ:1.00
 O1B B:ADP401 2.1 0.2 1.0
O1A B:ADP401 2.2 0.2 1.0
PB B:ADP401 2.4 0.2 1.0
O2B B:ADP401 2.5 0.2 1.0
O3A B:ADP401 2.5 0.2 1.0
NZ B:LYS20 2.8 0.2 1.0
PA B:ADP401 2.9 0.2 1.0
O2A B:ADP401 3.9 0.2 1.0
O3B B:ADP401 3.9 0.2 1.0
OD2 B:ASP13 4.0 0.3 1.0
O5' B:ADP401 4.1 0.2 1.0
CE B:LYS20 4.2 0.2 1.0
O B:MET18 4.4 0.4 1.0
O B:LYS338 4.4 0.5 1.0
CA B:GLY15 4.6 0.5 1.0
CD B:LYS20 4.7 0.2 1.0
CG B:MET18 4.7 0.4 1.0
CG B:ASP13 4.8 0.3 1.0

Magnesium binding site 3 out of 5 in 6iug

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Magnesium binding site 3 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:0.9
occ:1.00
 O1B C:ADP401 2.1 0.7 1.0
O1A C:ADP401 2.2 0.7 1.0
PB C:ADP401 2.4 0.7 1.0
O2B C:ADP401 2.5 0.7 1.0
O3A C:ADP401 2.5 0.7 1.0
NZ C:LYS20 2.8 0.2 1.0
PA C:ADP401 2.9 0.7 1.0
O2A C:ADP401 3.9 0.7 1.0
O3B C:ADP401 3.9 0.7 1.0
OD2 C:ASP13 4.0 0.3 1.0
O5' C:ADP401 4.1 0.7 1.0
CE C:LYS20 4.2 0.2 1.0
O C:MET18 4.4 0.5 1.0
O C:LYS338 4.4 0.3 1.0
CA C:GLY15 4.6 0.6 1.0
CD C:LYS20 4.7 0.2 1.0
CG C:MET18 4.7 0.5 1.0
CG C:ASP13 4.8 0.3 1.0

Magnesium binding site 4 out of 5 in 6iug

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Magnesium binding site 4 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:0.7
occ:1.00
 O1B D:ADP401 2.1 0.4 1.0
O1A D:ADP401 2.2 0.4 1.0
PB D:ADP401 2.4 0.4 1.0
O2B D:ADP401 2.5 0.4 1.0
O3A D:ADP401 2.5 0.4 1.0
NZ D:LYS20 2.8 0.1 1.0
PA D:ADP401 2.9 0.4 1.0
O2A D:ADP401 3.9 0.4 1.0
O3B D:ADP401 3.9 0.4 1.0
OD2 D:ASP13 4.0 0.0 1.0
O5' D:ADP401 4.1 0.4 1.0
CE D:LYS20 4.2 0.1 1.0
O D:MET18 4.4 0.8 1.0
O D:LYS338 4.4 0.3 1.0
CA D:GLY15 4.6 0.3 1.0
CD D:LYS20 4.7 0.1 1.0
CG D:MET18 4.7 0.8 1.0
CG D:ASP13 4.8 0.0 1.0

Magnesium binding site 5 out of 5 in 6iug

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Magnesium binding site 5 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:0.5
occ:1.00
 O1B E:ADP401 2.1 0.6 1.0
O1A E:ADP401 2.2 0.6 1.0
PB E:ADP401 2.4 0.6 1.0
O2B E:ADP401 2.5 0.6 1.0
O3A E:ADP401 2.5 0.6 1.0
NZ E:LYS20 2.8 0.3 1.0
PA E:ADP401 2.9 0.6 1.0
O2A E:ADP401 3.9 0.6 1.0
O3B E:ADP401 3.9 0.6 1.0
OD2 E:ASP13 4.0 0.3 1.0
O5' E:ADP401 4.1 0.6 1.0
CE E:LYS20 4.2 0.3 1.0
O E:MET18 4.4 0.4 1.0
O E:LYS338 4.4 0.9 1.0
CA E:GLY15 4.6 0.7 1.0
CD E:LYS20 4.7 0.3 1.0
CG E:MET18 4.7 0.4 1.0
CG E:ASP13 4.8 0.3 1.0

Reference:

Z.Ren, Y.Zhang, Y.Zhang, Y.He, P.Du, Z.Wang, F.Sun, H.Ren. Cryo-Em Structure of Actin Filaments From Zea Mays Pollen. Plant Cell 2019.
ISSN: ESSN 1532-298X
PubMed: 31628168
DOI: 10.1105/TPC.18.00973
Page generated: Tue Oct 1 03:57:14 2024

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