Magnesium in PDB 6j9f: Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7

Enzymatic activity of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7

All present enzymatic activity of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7:
2.7.7.6;

Other elements in 6j9f:

The structure of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 (pdb code 6j9f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7, PDB code: 6j9f:

Magnesium binding site 1 out of 1 in 6j9f

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Magnesium Binding Sites List in 6j9f

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg1501 b:39.8 occ:1.00	O3'	I:A20	2.1	43.9	1.0
	OD2	D:ASP464	2.2	36.1	1.0
	OD1	D:ASP464	2.6	36.1	1.0
	OD2	D:ASP462	2.6	38.8	1.0
	CG	D:ASP464	2.7	36.1	1.0
	C3'	I:A20	3.2	43.9	1.0
	O2'	I:A20	3.3	43.9	1.0
	C4'	I:A20	3.4	43.9	1.0
	CB	D:ASP460	3.4	38.8	1.0
	CG	D:ASP462	3.6	38.8	1.0
	O	D:ASP460	3.7	38.8	1.0
	NH2	D:ARG425	3.7	34.9	1.0
	N	D:ASP460	3.8	38.8	1.0
	OD1	D:ASP462	3.8	38.8	1.0
	C2'	I:A20	3.8	43.9	1.0
	CA	D:ASP460	3.9	38.8	1.0
	C	D:ASP460	4.0	38.8	1.0
	C5'	I:A20	4.1	43.9	1.0
	CB	D:ASP464	4.2	36.1	1.0
	CG	D:ASP460	4.5	38.8	1.0
	O4'	I:A20	4.6	43.9	1.0
	N	D:ASP462	4.7	38.8	1.0
	OD2	D:ASP460	4.8	38.8	1.0
	C1'	I:A20	4.9	43.9	1.0
	C	D:ALA459	4.9	37.6	1.0
	CB	D:ASP462	4.9	38.8	1.0
	CZ	D:ARG425	5.0	34.9	1.0

Reference:

L.You, J.Shi, L.Shen, L.Li, C.Fang, C.Yu, W.Cheng, Y.Feng, Y.Zhang. Structural Basis For Transcription Antitermination at Bacterial Intrinsic Terminator. Nat Commun V. 10 3048 2019.
ISSN: ESSN 2041-1723
PubMed: 31296855
DOI: 10.1038/S41467-019-10955-X

Page generated: Wed Aug 13 09:04:33 2025

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