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Magnesium in PDB 6jbd: Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway

Enzymatic activity of Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway

All present enzymatic activity of Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway:
2.7.1.169;

Protein crystallography data

The structure of Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway, PDB code: 6jbd was solved by A.Kita, A.Kishimoto, T.Shimosaka, H.Tomita, Y.Yokooji, T.Imanaka, H.Atomi, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 2.50
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.323, 95.323, 60.691, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 25.9

Other elements in 6jbd:

The structure of Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway (pdb code 6jbd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway, PDB code: 6jbd:

Magnesium binding site 1 out of 1 in 6jbd

Go back to Magnesium Binding Sites List in 6jbd
Magnesium binding site 1 out of 1 in the Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phosphotransferase-Atp Complex Related to Coa Biosynthesis Pathway within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg407

b:41.1
occ:1.00
 O2B A:ATP406 2.6 71.9 1.0
O3G A:ATP406 2.6 67.9 1.0
C5' A:ATP406 3.0 82.8 1.0
O5' A:ATP406 3.1 80.8 1.0
PB A:ATP406 3.7 70.5 1.0
PG A:ATP406 3.7 68.2 1.0
O3B A:ATP406 3.9 70.5 1.0
O3A A:ATP406 4.1 75.5 1.0
PA A:ATP406 4.2 80.0 1.0
O2G A:ATP406 4.2 68.3 1.0
O A:GLY139 4.5 32.3 1.0
C4' A:ATP406 4.5 84.5 1.0
O1A A:ATP406 4.7 78.9 1.0
CA A:GLY98 4.8 30.1 1.0
N A:GLY98 5.0 31.0 1.0

Reference:

A.Kita, A.Kishimoto, T.Shimosaka, H.Tomita, Y.Yokooji, T.Imanaka, H.Atomi, K.Miki. Crystal Structure of Phosphotransferase Related to Coa Biosynthesis Pathway To Be Published.
Page generated: Wed Aug 13 09:05:07 2025

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