Magnesium in PDB 6jq5: The Structure of Hatchet Ribozyme

The structure of The Structure of Hatchet Ribozyme, PDB code: 6jq5 was solved by A.Ren, L.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.52 / 2.06
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.582, 104.275, 126.862, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 23.1

The binding sites of Magnesium atom in the The Structure of Hatchet Ribozyme (pdb code 6jq5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Hatchet Ribozyme, PDB code: 6jq5:

Magnesium binding site 1 out of 1 in the The Structure of Hatchet Ribozyme


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Hatchet Ribozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:83.1 occ:1.00 O A:HOH225 1.9 83.3 1.0 O A:HOH201 2.1 94.2 1.0 O A:HOH227 2.3 82.1 1.0 O A:HOH206 2.3 63.2 1.0 O A:HOH209 3.5 57.6 1.0 N3 A:A15 4.0 47.6 1.0 C2 A:A15 4.1 46.6 1.0 O2' A:G16 4.1 87.7 1.0 C1' A:G6 4.4 52.3 1.0 C1' A:G16 4.4 75.6 1.0 O2 A:U5 4.5 54.5 1.0 O4' A:G6 4.7 57.2 1.0 O2' A:G6 4.8 59.4 1.0 O4' A:G16 4.8 81.6 1.0 N3 A:G6 4.9 46.5 1.0 C2' A:G16 5.0 79.1 1.0

L.Zheng, C.Falschlunger, K.Huang, E.Mairhofer, S.Yuan, J.Wang, D.J.Patel, R.Micura, A.Ren. Hatchet Ribozyme Structure and Implications For Cleavage Mechanism. Proc.Natl.Acad.Sci.Usa V. 116 10783 2019.
ISSN: ESSN 1091-6490
PubMed: 31088965
DOI: 10.1073/PNAS.1902413116