Atomistry » Magnesium » PDB 6kqm-6l59 » 6kvw
Atomistry »
  Magnesium »
    PDB 6kqm-6l59 »
      6kvw »

Magnesium in PDB 6kvw: The Complex Structure of Eanb/C339A/C370A and Hercynine

Protein crystallography data

The structure of The Complex Structure of Eanb/C339A/C370A and Hercynine, PDB code: 6kvw was solved by L.Wu, P.H.Liu, J.H.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.25
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 87.823, 110.851, 120.760, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 23.6

Other elements in 6kvw:

The structure of The Complex Structure of Eanb/C339A/C370A and Hercynine also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Calcium (Ca) 1 atom
Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Complex Structure of Eanb/C339A/C370A and Hercynine (pdb code 6kvw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Complex Structure of Eanb/C339A/C370A and Hercynine, PDB code: 6kvw:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6kvw

Go back to Magnesium Binding Sites List in 6kvw
Magnesium binding site 1 out of 3 in the The Complex Structure of Eanb/C339A/C370A and Hercynine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Complex Structure of Eanb/C339A/C370A and Hercynine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:35.0
occ:1.00
O A:THR414 2.3 34.8 1.0
O A:ASP437 2.3 33.4 1.0
O A:TRP216 2.3 32.6 1.0
O A:HOH758 2.4 35.8 1.0
OD1 A:ASN217 2.4 32.5 1.0
OD1 A:ASP437 2.5 32.3 1.0
C A:ASP437 3.1 33.2 1.0
C A:TRP216 3.2 32.7 1.0
C A:THR414 3.3 36.5 1.0
CG A:ASP437 3.4 32.6 1.0
CG A:ASN217 3.5 33.2 1.0
CA A:ASN217 3.5 32.2 1.0
N A:ASN217 3.6 32.5 1.0
N A:GLY438 3.8 33.5 1.0
CA A:ASP437 3.8 33.2 1.0
CA A:THR414 3.9 36.2 1.0
NH2 A:ARG266 3.9 32.8 1.0
CA A:GLY438 3.9 35.2 1.0
CB A:ASP437 4.0 33.1 1.0
O A:HOH706 4.0 32.6 1.0
CB A:ASN217 4.1 32.0 1.0
OD2 A:ASP437 4.2 32.7 1.0
O A:GLY438 4.2 35.9 1.0
C A:GLY438 4.2 34.7 1.0
N A:GLY415 4.3 36.7 1.0
CB A:THR414 4.3 38.7 1.0
O A:THR215 4.3 33.3 1.0
CA A:TRP216 4.4 33.2 1.0
CB A:TRP216 4.5 33.6 1.0
CA A:GLY415 4.6 34.5 1.0
ND2 A:ASN217 4.6 34.3 1.0
CZ A:ARG266 4.6 31.8 1.0
NH1 A:ARG266 4.7 32.7 1.0
C A:ASN217 4.8 32.7 1.0
O A:HOH617 4.9 35.2 1.0

Magnesium binding site 2 out of 3 in 6kvw

Go back to Magnesium Binding Sites List in 6kvw
Magnesium binding site 2 out of 3 in the The Complex Structure of Eanb/C339A/C370A and Hercynine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Complex Structure of Eanb/C339A/C370A and Hercynine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:22.4
occ:1.00
O B:THR414 2.2 23.4 1.0
O B:ASP437 2.2 21.7 1.0
O B:HOH777 2.4 24.5 1.0
O B:TRP216 2.4 25.2 1.0
OD1 B:ASN217 2.4 23.8 1.0
OD1 B:ASP437 2.5 23.1 1.0
C B:ASP437 3.0 22.6 1.0
C B:THR414 3.2 23.3 1.0
C B:TRP216 3.3 24.6 1.0
CG B:ASP437 3.3 23.6 1.0
CG B:ASN217 3.5 24.5 1.0
CA B:ASN217 3.6 24.4 1.0
N B:ASN217 3.7 25.2 1.0
CA B:ASP437 3.8 22.6 1.0
N B:GLY438 3.8 24.0 1.0
CA B:THR414 3.9 24.2 1.0
NH2 B:ARG266 3.9 22.8 1.0
CA B:GLY438 3.9 23.8 1.0
CB B:ASP437 4.0 23.1 1.0
O B:HOH699 4.1 23.7 1.0
CB B:ASN217 4.2 24.7 1.0
OD2 B:ASP437 4.2 23.8 1.0
O B:GLY438 4.2 23.8 1.0
C B:GLY438 4.2 25.9 1.0
CB B:THR414 4.3 24.1 1.0
N B:GLY415 4.3 23.3 1.0
O B:THR215 4.4 26.9 1.0
CA B:TRP216 4.5 26.4 1.0
CB B:TRP216 4.5 25.3 1.0
CA B:GLY415 4.5 21.9 1.0
CZ B:ARG266 4.6 24.0 1.0
ND2 B:ASN217 4.6 23.6 1.0
NH1 B:ARG266 4.7 21.4 1.0
O B:HOH618 4.8 23.1 1.0
C B:ASN217 4.8 24.6 1.0

Magnesium binding site 3 out of 3 in 6kvw

Go back to Magnesium Binding Sites List in 6kvw
Magnesium binding site 3 out of 3 in the The Complex Structure of Eanb/C339A/C370A and Hercynine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Complex Structure of Eanb/C339A/C370A and Hercynine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:51.2
occ:1.00
O B:SER47 2.3 38.0 1.0
O B:HOH805 2.4 37.4 1.0
O B:VAL50 2.4 37.1 1.0
O B:HOH835 2.4 37.1 1.0
O B:HOH804 2.6 37.8 1.0
O B:HOH829 2.6 35.5 1.0
C B:SER47 3.5 38.5 1.0
C B:VAL50 3.5 37.1 1.0
N B:VAL50 4.1 40.8 1.0
CA B:VAL50 4.1 39.9 1.0
CB B:VAL50 4.2 38.9 1.0
CA B:GLU48 4.2 38.9 1.0
N B:GLU48 4.3 38.5 1.0
O B:HOH673 4.3 32.6 1.0
C B:GLU48 4.4 39.7 1.0
O B:HOH848 4.4 34.9 1.0
O B:LEU45 4.4 35.8 1.0
N B:SER47 4.4 37.2 1.0
O B:HOH723 4.4 35.2 1.0
O B:GLU48 4.5 38.6 1.0
CA B:SER47 4.5 37.2 1.0
N B:LYS51 4.6 35.0 1.0
O B:LEU44 4.7 35.6 1.0
CG1 B:VAL50 4.8 36.1 1.0
C B:GLY46 4.9 36.7 1.0
CA B:LYS51 4.9 33.2 1.0
CB B:SER47 5.0 38.7 1.0
N B:LYS49 5.0 41.9 1.0

Reference:

L.Wu, P.H.Liu, J.H.Zhou. The Complex Structure of Eanb/C339A/C370A and Hercynine To Be Published.
Page generated: Tue Oct 1 09:56:08 2024

Last articles

K in 4C7W
K in 4C7L
K in 4C8Z
K in 4C73
K in 4C72
K in 4C71
K in 4C70
K in 4C6Z
K in 4C6X
K in 4BZ9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy