Magnesium in PDB 6l6o: Crystal Structure of Stabilized RAB5A Gtpase Domain From Leishmania Donovani

The structure of Crystal Structure of Stabilized RAB5A Gtpase Domain From Leishmania Donovani, PDB code: 6l6o was solved by A.Arora, M.Zohib, B.K.Biswal, D.Maheshwari, R.K.Pal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.42 / 1.80
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	58.018, 58.018, 103.418, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 20.3

The binding sites of Magnesium atom in the Crystal Structure of Stabilized RAB5A Gtpase Domain From Leishmania Donovani (pdb code 6l6o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Stabilized RAB5A Gtpase Domain From Leishmania Donovani, PDB code: 6l6o:

Magnesium binding site 1 out of 1 in the Crystal Structure of Stabilized RAB5A Gtpase Domain From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Stabilized RAB5A Gtpase Domain From Leishmania Donovani within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg204 b:26.1 occ:1.00 O A:HOH322 2.0 25.4 1.0 O A:HOH333 2.0 27.3 1.0 OG A:SER27 2.0 26.9 1.0 O2B A:GDP201 2.0 24.4 1.0 O A:HOH312 2.1 26.3 1.0 O A:HOH351 2.1 25.9 1.0 CB A:SER27 3.2 27.6 1.0 PB A:GDP201 3.3 27.2 1.0 O1B A:GDP201 3.6 26.0 1.0 N A:SER27 3.9 26.4 1.0 OD2 A:ASP68 4.0 27.7 1.0 CA A:SER27 4.1 28.5 1.0 OG1 A:THR69 4.1 25.7 1.0 O A:HOH357 4.1 34.6 1.0 O1A A:GDP201 4.2 30.2 1.0 O A:THR44 4.2 41.3 1.0 OD1 A:ASP68 4.2 26.2 1.0 OG1 A:THR44 4.3 48.7 1.0 O3B A:GDP201 4.3 24.4 1.0 OE2 A:GLU73 4.3 25.6 1.0 O3A A:GDP201 4.3 28.0 1.0 O A:HOH347 4.4 28.8 1.0 CG A:ASP68 4.5 28.0 1.0 PA A:GDP201 4.7 29.0 1.0 CB A:LYS26 4.7 24.1 1.0 N A:GLY71 4.8 29.6 1.0 CE A:LYS26 4.8 22.9 1.0 NZ A:LYS26 4.9 22.8 1.0 O2A A:GDP201 4.9 29.4 1.0 O A:HOH310 4.9 34.7 1.0 CA A:THR44 5.0 42.7 1.0

M.Zohib, D.Maheshwari, R.K.Pal, S.Freitag-Pohl, B.K.Biswal, E.Pohl, A.Arora. Crystal Structure of the Gdp-Bound Gtpase Domain of RAB5A From Leishmania Donovani. Acta Crystallogr.,Sect.F V. 76 544 2020.
ISSN: ESSN 2053-230X
PubMed: 33135673
DOI: 10.1107/S2053230X20013722