Magnesium in PDB 6lcp: Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State

All present enzymatic activity of Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State:
7.6.2.1;

The structure of Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State (pdb code 6lcp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State, PDB code: 6lcp:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E2P State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:24.7 occ:1.00 OD2 A:ASP606 2.0 23.0 1.0 OD2 A:ASP1061 2.7 28.5 1.0 BE A:BEF2002 2.9 26.8 1.0 CG A:ASP606 3.0 23.0 1.0 F3 A:BEF2002 3.1 26.8 1.0 F2 A:BEF2002 3.4 26.8 1.0 OD1 A:ASP606 3.6 23.0 1.0 F1 A:BEF2002 3.6 26.8 1.0 CB A:ASP1057 3.7 29.0 1.0 CG A:ASP1061 3.8 28.5 1.0 N A:GLY609 3.8 23.6 1.0 N A:GLY1058 4.0 29.2 1.0 C A:ASP1057 4.0 29.0 1.0 CA A:GLY609 4.0 23.6 1.0 CB A:ASP606 4.1 23.0 1.0 N A:ASP1057 4.1 29.0 1.0 CA A:ASP1057 4.1 29.0 1.0 O A:LYS369 4.2 49.9 1.0 OD1 A:ASP1061 4.3 28.5 1.0 CA A:GLY1058 4.5 29.2 1.0 O A:ASP1057 4.5 29.0 1.0 OD1 A:ASN1060 4.6 30.4 1.0 CG A:ASP1057 4.7 29.0 1.0 C A:THR608 4.9 26.6 1.0 ND2 A:ASN1060 4.9 30.4 1.0 OD1 A:ASP1057 4.9 29.0 1.0 CB A:ASP1061 5.0 28.5 1.0

Y.He, J.Xu, X.Wu, L.Li. Structures of A P4-Atpase Lipid Flippase in Lipid Bilayers. Protein Cell 2020.
ISSN: ESSN 1674-8018
PubMed: 32303992
DOI: 10.1007/S13238-020-00712-Y