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Magnesium in PDB 6mij: Crystal Structure of Ef-Tu From Acinetobacter Baumannii in Complex with MG2+ and Gdp

Protein crystallography data

The structure of Crystal Structure of Ef-Tu From Acinetobacter Baumannii in Complex with MG2+ and Gdp, PDB code: 6mij was solved by P.J.Stogios, E.Evdokimova, K.Tan, R.Di Leo, A.Savchenko, K.J.F.Satchell, A.J.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.13 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.386, 71.578, 114.002, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ef-Tu From Acinetobacter Baumannii in Complex with MG2+ and Gdp (pdb code 6mij). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ef-Tu From Acinetobacter Baumannii in Complex with MG2+ and Gdp, PDB code: 6mij:

Magnesium binding site 1 out of 1 in 6mij

Go back to Magnesium Binding Sites List in 6mij
Magnesium binding site 1 out of 1 in the Crystal Structure of Ef-Tu From Acinetobacter Baumannii in Complex with MG2+ and Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ef-Tu From Acinetobacter Baumannii in Complex with MG2+ and Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:34.5
occ:1.00
O A:HOH525 1.9 36.1 1.0
O A:HOH561 2.0 37.4 1.0
O1B A:GDP402 2.1 31.5 1.0
OG1 A:THR26 2.1 51.5 1.0
O A:HOH550 2.2 35.8 1.0
O A:HOH643 2.3 45.3 1.0
CB A:THR26 3.3 40.1 1.0
PB A:GDP402 3.4 34.0 1.0
O2B A:GDP402 3.5 38.1 1.0
N A:THR26 3.9 31.7 1.0
O A:CYS82 4.1 48.5 1.0
O2A A:GDP402 4.1 34.6 1.0
OD1 A:ASP51 4.1 77.2 1.0
OD2 A:ASP81 4.2 48.8 1.0
CA A:THR26 4.2 33.3 1.0
O A:HOH560 4.2 51.0 1.0
CG2 A:THR26 4.3 37.6 1.0
O3B A:GDP402 4.3 33.7 1.0
O3A A:GDP402 4.5 34.6 1.0
O A:HOH536 4.6 58.7 1.0
PA A:GDP402 4.7 34.9 1.0
OD1 A:ASP81 4.7 46.1 1.0
CA A:PRO83 4.7 67.0 1.0
CB A:LYS25 4.8 31.6 1.0
O A:PRO83 4.8 71.6 1.0
CG A:ASP81 4.9 45.8 1.0
O1A A:GDP402 4.9 34.0 1.0
CE A:LYS25 4.9 33.5 1.0
O A:HOH505 4.9 47.2 1.0
C A:CYS82 5.0 56.1 1.0
C A:LYS25 5.0 30.9 1.0

Reference:

P.J.Stogios, P.J.Stogios, E.Evdokimova, K.Tan, R.Di Leo, A.Savchenko, K.J.F.Satchell, A.J.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). N/A N/A.
Page generated: Wed Aug 13 12:10:08 2025

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