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Magnesium in PDB 6moi: Dimeric Darpin C_ANGLE_R5 Complex with Epor

Protein crystallography data

The structure of Dimeric Darpin C_ANGLE_R5 Complex with Epor, PDB code: 6moi was solved by K.M.Jude, K.Mohan, K.C.Garcia, Y.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.82 / 2.07
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 112.748, 112.748, 280.793, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 25.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Dimeric Darpin C_ANGLE_R5 Complex with Epor (pdb code 6moi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dimeric Darpin C_ANGLE_R5 Complex with Epor, PDB code: 6moi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6moi

Go back to Magnesium Binding Sites List in 6moi
Magnesium binding site 1 out of 2 in the Dimeric Darpin C_ANGLE_R5 Complex with Epor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimeric Darpin C_ANGLE_R5 Complex with Epor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg308

b:0.1
occ:1.00
O A:HOH412 2.0 0.2 1.0
O A:HOH414 3.1 67.3 1.0
OG1 A:THR34 3.3 52.3 1.0
O A:HOH413 4.0 73.5 1.0
CG2 A:THR34 4.2 40.2 1.0
CB A:THR34 4.4 41.1 1.0
O A:ASN32 4.5 52.7 1.0
N A:THR34 4.8 51.0 1.0
O A:HOH410 5.0 79.8 1.0

Magnesium binding site 2 out of 2 in 6moi

Go back to Magnesium Binding Sites List in 6moi
Magnesium binding site 2 out of 2 in the Dimeric Darpin C_ANGLE_R5 Complex with Epor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dimeric Darpin C_ANGLE_R5 Complex with Epor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg306

b:63.5
occ:1.00
O3 B:SO4301 2.3 86.8 1.0
S B:SO4301 3.7 94.6 1.0
NH1 B:ARG197 4.0 50.2 1.0
NH2 B:ARG197 4.2 49.6 1.0
O1 B:SO4301 4.3 98.5 1.0
O4 B:SO4301 4.4 93.0 1.0
CD1 B:TRP209 4.4 51.0 1.0
CZ B:ARG197 4.5 43.9 1.0
O2 B:SO4301 4.6 84.7 1.0
NE1 B:TRP209 5.0 56.9 1.0

Reference:

K.Mohan, G.Ueda, A.R.Kim, K.M.Jude, J.A.Fallas, Y.Guo, M.Hafer, Y.Miao, R.A.Saxton, J.Piehler, V.G.Sankaran, D.Baker, K.C.Garcia. Topological Control of Cytokine Receptor Signaling Induces Differential Effects in Hematopoiesis. Science V. 364 2019.
ISSN: ESSN 1095-9203
PubMed: 31123111
DOI: 10.1126/SCIENCE.AAV7532
Page generated: Tue Oct 1 11:56:02 2024

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