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Magnesium in PDB 6mrd: Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex

Enzymatic activity of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex

All present enzymatic activity of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex:
3.6.4.9;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex (pdb code 6mrd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex, PDB code: 6mrd:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 6mrd

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Magnesium binding site 1 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:0.3
occ:1.00
 O1A A:ADP601 1.9 0.5 1.0
O1B A:ADP601 2.0 0.5 1.0
OD1 A:ASP87 2.1 0.2 1.0
O3B A:ADP601 2.1 0.5 1.0
PB A:ADP601 2.3 0.5 1.0
CG A:ASP87 2.8 0.2 1.0
PA A:ADP601 2.8 0.5 1.0
OD2 A:ASP87 2.8 0.2 1.0
O3A A:ADP601 2.9 0.5 1.0
H A:GLY88 3.2 0.6 1.0
O2A A:ADP601 3.4 0.5 1.0
O2B A:ADP601 3.7 0.5 1.0
N A:GLY88 4.0 0.6 1.0
H A:THR89 4.1 0.7 1.0
HA2 A:GLY88 4.2 0.6 1.0
O5' A:ADP601 4.2 0.5 1.0
CB A:ASP87 4.2 0.2 1.0
HA A:ASP87 4.5 0.2 1.0
CA A:GLY88 4.6 0.6 1.0
H A:THR90 4.6 0.9 1.0
C5' A:ADP601 4.7 0.5 1.0
HB3 A:ASP87 4.7 0.2 1.0
HB2 A:ASP87 4.7 0.2 1.0
HG1 A:THR90 4.8 0.9 1.0
CA A:ASP87 4.8 0.2 1.0
C A:ASP87 4.8 0.2 1.0
N A:THR89 4.9 0.7 1.0
HB A:THR90 5.0 0.9 1.0

Magnesium binding site 2 out of 7 in 6mrd

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Magnesium binding site 2 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:0.0
occ:1.00
 O1A G:ADP601 2.0 0.3 1.0
O1B G:ADP601 2.0 0.3 1.0
O3B G:ADP601 2.0 0.3 1.0
OD1 G:ASP87 2.1 0.4 1.0
PB G:ADP601 2.3 0.3 1.0
PA G:ADP601 2.8 0.3 1.0
CG G:ASP87 2.8 0.4 1.0
O3A G:ADP601 2.9 0.3 1.0
OD2 G:ASP87 2.9 0.4 1.0
H G:GLY88 3.3 0.1 1.0
O2A G:ADP601 3.3 0.3 1.0
O2B G:ADP601 3.7 0.3 1.0
N G:GLY88 4.0 0.1 1.0
HA2 G:GLY88 4.1 0.1 1.0
O5' G:ADP601 4.2 0.3 1.0
H G:THR89 4.3 0.3 1.0
CB G:ASP87 4.3 0.4 1.0
CA G:GLY88 4.6 0.1 1.0
HA G:ASP87 4.6 0.4 1.0
C5' G:ADP601 4.7 0.3 1.0
HB3 G:ASP87 4.8 0.4 1.0
H G:THR90 4.8 0.4 1.0
HB2 G:ASP87 4.8 0.4 1.0
HG1 G:THR90 4.9 0.4 1.0
CA G:ASP87 4.9 0.4 1.0
C G:ASP87 4.9 0.4 1.0
N G:THR89 5.0 0.3 1.0

Magnesium binding site 3 out of 7 in 6mrd

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Magnesium binding site 3 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg602

b:95.0
occ:1.00
 O1A F:ADP601 2.0 0.7 1.0
PA F:ADP601 2.4 0.7 1.0
O5' F:ADP601 2.6 0.7 1.0
O3A F:ADP601 2.7 0.7 1.0
HG1 F:THR90 3.0 0.9 1.0
OG1 F:THR90 3.6 0.9 1.0
H F:THR90 3.7 0.9 1.0
CB F:THR90 3.7 0.9 1.0
O2A F:ADP601 3.8 0.7 1.0
HG22 F:THR90 3.9 0.9 1.0
C5' F:ADP601 3.9 0.7 1.0
H F:THR91 4.0 0.5 1.0
HA F:MET31 4.0 0.0 1.0
OD1 F:ASP87 4.1 0.3 1.0
HA2 F:GLY88 4.1 0.1 1.0
CG2 F:THR90 4.2 0.9 1.0
HG21 F:THR90 4.2 0.9 1.0
HG3 F:MET31 4.2 0.0 1.0
O F:THR30 4.2 0.4 1.0
PB F:ADP601 4.2 0.7 1.0
H F:GLY88 4.4 0.1 1.0
N F:THR90 4.4 0.9 1.0
H F:THR89 4.5 0.7 1.0
O1B F:ADP601 4.6 0.7 1.0
HB F:THR90 4.6 0.9 1.0
CA F:THR90 4.6 0.9 1.0
N F:THR91 4.7 0.5 1.0
H F:GLY32 4.7 0.6 1.0
HZ1 F:LYS51 4.8 0.4 1.0
OG1 F:THR91 4.8 0.5 1.0
HZ3 F:LYS51 4.9 0.4 1.0
CA F:GLY88 4.9 0.1 1.0
HG1 F:THR91 4.9 0.5 1.0
N F:THR89 5.0 0.7 1.0
CA F:MET31 5.0 0.0 1.0
N F:GLY88 5.0 0.1 1.0

Magnesium binding site 4 out of 7 in 6mrd

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Magnesium binding site 4 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:0.2
occ:1.00
 O1A E:ADP601 2.0 0.6 1.0
O3B E:ADP601 2.0 0.6 1.0
O1B E:ADP601 2.0 0.6 1.0
OD1 E:ASP87 2.2 0.6 1.0
PB E:ADP601 2.3 0.6 1.0
OD2 E:ASP87 2.7 0.6 1.0
PA E:ADP601 2.8 0.6 1.0
CG E:ASP87 2.8 0.6 1.0
O3A E:ADP601 2.9 0.6 1.0
O2A E:ADP601 3.2 0.6 1.0
H E:GLY88 3.3 0.4 1.0
O2B E:ADP601 3.7 0.6 1.0
N E:GLY88 4.0 0.4 1.0
HA2 E:GLY88 4.2 0.4 1.0
O5' E:ADP601 4.2 0.6 1.0
CB E:ASP87 4.3 0.6 1.0
H E:THR89 4.3 0.1 1.0
HB3 E:ASP87 4.7 0.6 1.0
CA E:GLY88 4.7 0.4 1.0
HA E:ASP87 4.7 0.6 1.0
H E:THR90 4.7 0.1 1.0
C5' E:ADP601 4.7 0.6 1.0
HB2 E:ASP87 4.8 0.6 1.0
HG1 E:THR90 4.8 0.1 1.0
CA E:ASP87 4.9 0.6 1.0
C E:ASP87 4.9 0.6 1.0
HB E:THR90 4.9 0.1 1.0
N E:THR89 5.0 0.1 1.0

Magnesium binding site 5 out of 7 in 6mrd

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Magnesium binding site 5 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:0.2
occ:1.00
 O1A D:ADP601 1.9 0.5 1.0
O1B D:ADP601 2.0 0.5 1.0
O3B D:ADP601 2.0 0.5 1.0
OD1 D:ASP87 2.1 0.9 1.0
PB D:ADP601 2.3 0.5 1.0
CG D:ASP87 2.8 0.9 1.0
OD2 D:ASP87 2.8 0.9 1.0
PA D:ADP601 2.8 0.5 1.0
O3A D:ADP601 2.9 0.5 1.0
H D:GLY88 3.3 0.7 1.0
O2A D:ADP601 3.4 0.5 1.0
O2B D:ADP601 3.7 0.5 1.0
N D:GLY88 4.0 0.7 1.0
HA2 D:GLY88 4.2 0.7 1.0
O5' D:ADP601 4.2 0.5 1.0
H D:THR89 4.3 1.0 1.0
CB D:ASP87 4.3 0.9 1.0
HA D:ASP87 4.6 0.9 1.0
CA D:GLY88 4.6 0.7 1.0
C5' D:ADP601 4.6 0.5 1.0
HB3 D:ASP87 4.7 0.9 1.0
H D:THR90 4.7 0.8 1.0
HB2 D:ASP87 4.8 0.9 1.0
CA D:ASP87 4.8 0.9 1.0
HG1 D:THR90 4.8 0.8 1.0
C D:ASP87 4.9 0.9 1.0
N D:THR89 5.0 1.0 1.0

Magnesium binding site 6 out of 7 in 6mrd

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Magnesium binding site 6 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:0.8
occ:1.00
 O1B C:ADP601 1.9 0.5 1.0
O1A C:ADP601 2.1 0.5 1.0
O3A C:ADP601 2.2 0.5 1.0
C5' C:ADP601 2.3 0.5 1.0
PA C:ADP601 2.3 0.5 1.0
PB C:ADP601 2.5 0.5 1.0
O5' C:ADP601 2.6 0.5 1.0
C4' C:ADP601 3.1 0.5 1.0
O3B C:ADP601 3.5 0.5 1.0
C3' C:ADP601 3.7 0.5 1.0
O2B C:ADP601 3.7 0.5 1.0
O2A C:ADP601 3.8 0.5 1.0
O3' C:ADP601 3.9 0.5 1.0
OD1 C:ASP87 4.1 0.9 1.0
HA2 C:GLY88 4.1 0.6 1.0
OD2 C:ASP87 4.3 0.9 1.0
O4' C:ADP601 4.3 0.5 1.0
HG1 C:THR91 4.4 0.2 1.0
CG C:ASP87 4.5 0.9 1.0
HG3 C:MET31 4.5 0.2 1.0
H C:GLY88 4.5 0.6 1.0
OG1 C:THR91 4.6 0.2 1.0
HB C:THR90 4.7 0.8 1.0
H C:GLY32 4.8 0.3 1.0
CA C:GLY88 5.0 0.6 1.0
N C:GLY88 5.0 0.6 1.0

Magnesium binding site 7 out of 7 in 6mrd

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Magnesium binding site 7 out of 7 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Adp-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:0.2
occ:1.00
 O1A B:ADP601 1.9 0.2 1.0
O1B B:ADP601 2.0 0.2 1.0
OD1 B:ASP87 2.1 0.8 1.0
O3B B:ADP601 2.2 0.2 1.0
PB B:ADP601 2.3 0.2 1.0
PA B:ADP601 2.7 0.2 1.0
O3A B:ADP601 2.8 0.2 1.0
CG B:ASP87 2.8 0.8 1.0
OD2 B:ASP87 2.9 0.8 1.0
O2A B:ADP601 3.2 0.2 1.0
H B:GLY88 3.3 0.9 1.0
O2B B:ADP601 3.8 0.2 1.0
N B:GLY88 4.0 0.9 1.0
H B:THR89 4.1 0.1 1.0
O5' B:ADP601 4.2 0.2 1.0
HA2 B:GLY88 4.3 0.9 1.0
CB B:ASP87 4.3 0.8 1.0
HA B:ASP87 4.5 0.8 1.0
H B:THR90 4.6 0.7 1.0
CA B:GLY88 4.7 0.9 1.0
C5' B:ADP601 4.7 0.2 1.0
HG1 B:THR90 4.7 0.7 1.0
HB3 B:ASP87 4.7 0.8 1.0
HB2 B:ASP87 4.8 0.8 1.0
CA B:ASP87 4.8 0.8 1.0
N B:THR89 4.9 0.1 1.0
C B:ASP87 4.9 0.8 1.0
HB B:THR90 5.0 0.7 1.0

Reference:

Y.Gomez-Llorente, F.Jebara, R.Malik, S.Nissemblat, A.Azem, J.A.Hirsch, I.Ubarretxena-Belandia. Structural Bases For the Reaction Cycle of the Human Mitochondrial HSP60-HSP10 Chaperonin Complex To Be Published.
Page generated: Tue Oct 1 11:59:17 2024

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