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Magnesium in PDB 6nl0: Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp

Enzymatic activity of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp

All present enzymatic activity of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp:
2.7.7.7;

Protein crystallography data

The structure of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp, PDB code: 6nl0 was solved by V.K.Batra, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.23 / 1.97
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.317, 79.933, 55.119, 90.00, 107.97, 90.00
R / Rfree (%) 19.3 / 23.7

Other elements in 6nl0:

The structure of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Chlorine (Cl) 1 atom
Sodium (Na) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp (pdb code 6nl0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp, PDB code: 6nl0:

Magnesium binding site 1 out of 1 in 6nl0

Go back to Magnesium Binding Sites List in 6nl0
Magnesium binding site 1 out of 1 in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:27.4
occ:1.00
 OD1 A:ASP190 2.0 29.0 1.0
OD2 A:ASP192 2.0 28.7 1.0
O1A A:GFF405 2.0 27.4 1.0
O A:HOH525 2.1 29.3 1.0
O1G A:GFF405 2.1 31.1 1.0
O2B A:GFF405 2.1 25.0 1.0
CG A:ASP192 3.0 25.2 1.0
CG A:ASP190 3.0 30.1 1.0
P2 A:GFF405 3.2 26.7 1.0
P3 A:GFF405 3.2 33.0 1.0
P1 A:GFF405 3.3 29.9 1.0
OD1 A:ASP192 3.4 26.7 1.0
NA A:NA402 3.4 29.6 1.0
OD2 A:ASP190 3.5 30.9 1.0
O3A A:GFF405 3.6 29.9 1.0
O3G A:GFF405 3.6 32.3 1.0
C3B A:GFF405 3.9 31.2 1.0
O A:ASP190 3.9 31.4 1.0
C5' A:GFF405 4.1 29.3 1.0
O5' A:GFF405 4.2 29.5 1.0
C A:ASP190 4.2 27.3 1.0
O A:HOH620 4.3 32.5 1.0
N A:ASP190 4.3 29.6 1.0
O A:HOH576 4.3 29.8 1.0
CB A:ASP190 4.3 27.9 1.0
CB A:ASP192 4.4 26.2 1.0
O2A A:GFF405 4.4 31.6 1.0
O2G A:GFF405 4.5 35.8 1.0
CA A:GLY179 4.5 26.3 1.0
CA A:ASP190 4.5 29.2 1.0
O1B A:GFF405 4.6 29.5 1.0
F2B A:GFF405 4.7 30.4 1.0
N A:SER180 4.7 28.3 1.0
N A:ASP192 4.7 29.1 1.0
N A:MET191 4.8 30.9 1.0
F1B A:GFF405 4.9 34.1 1.0

Reference:

V.K.Batra, S.H.Wilson. Crystal Structure of A Ternary Complex To Be Published.
Page generated: Tue Oct 1 12:45:47 2024

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