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Magnesium in PDB 6nmc: Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex (pdb code 6nmc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex, PDB code: 6nmc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6nmc

Go back to Magnesium Binding Sites List in 6nmc
Magnesium binding site 1 out of 2 in the Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:0.1
occ:1.00
OP2 G:A19 2.0 0.1 1.0
O A:THR716 2.1 0.1 1.0
C A:THR716 3.3 0.1 1.0
P G:A19 3.5 0.1 1.0
OP2 G:U18 4.0 0.1 1.0
NZ A:LYS707 4.0 0.1 1.0
CA A:PRO717 4.1 0.1 1.0
C A:PRO717 4.1 0.1 1.0
N A:PRO717 4.1 0.1 1.0
O5' G:A19 4.1 0.1 1.0
O A:PRO717 4.3 0.1 1.0
N A:THR716 4.3 0.1 1.0
OG1 A:THR716 4.3 0.1 1.0
CA A:THR716 4.3 0.1 1.0
OP1 G:A19 4.4 0.1 1.0
O5' G:U18 4.4 0.1 1.0
C3' G:U18 4.4 0.1 1.0
O3' G:U18 4.4 0.1 1.0
OP1 G:U18 4.4 0.1 1.0
P G:U18 4.5 0.1 1.0
OD1 A:ASP708 4.5 0.1 1.0
N A:ASN718 4.6 0.1 1.0
C A:GLY715 4.8 0.1 1.0
CB A:THR716 4.9 0.1 1.0

Magnesium binding site 2 out of 2 in 6nmc

Go back to Magnesium Binding Sites List in 6nmc
Magnesium binding site 2 out of 2 in the Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the LBCAS12A-Crrna-2XACRVA1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg101

b:42.6
occ:1.00
O G:HOH202 2.0 41.0 1.0
O G:HOH201 2.0 40.1 1.0
O G:HOH203 2.0 35.3 1.0
O A:HOH1401 2.0 45.7 1.0
O A:HOH1402 2.0 49.4 1.0
O G:HOH204 2.1 37.4 1.0
OP2 G:U9 4.1 0.1 1.0
OP2 G:A10 4.1 0.1 1.0
OP2 G:A4 4.2 0.1 1.0
OP1 G:A4 4.4 0.1 1.0
O4 G:U5 4.4 0.1 1.0
P G:A4 4.8 0.1 1.0

Reference:

H.Zhang, Z.Li, C.M.Daczkowski, C.Gabel, A.D.Mesecar, L.Chang. Structural Basis For the Inhibition of Crispr-CAS12A By Anti-Crispr Proteins. Cell Host Microbe V. 25 815 2019.
ISSN: ESSN 1934-6069
PubMed: 31155345
DOI: 10.1016/J.CHOM.2019.05.004
Page generated: Tue Oct 1 12:46:19 2024

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