Magnesium in PDB 6nn1: Xanthomonas Citri Pgm Apo-Dephospho

The structure of Xanthomonas Citri Pgm Apo-Dephospho, PDB code: 6nn1 was solved by K.M.Stiers, L.J.Beamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.02 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.020, 54.610, 171.960, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 20.5

The binding sites of Magnesium atom in the Xanthomonas Citri Pgm Apo-Dephospho (pdb code 6nn1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Xanthomonas Citri Pgm Apo-Dephospho, PDB code: 6nn1:

Magnesium binding site 1 out of 1 in the Xanthomonas Citri Pgm Apo-Dephospho


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Xanthomonas Citri Pgm Apo-Dephospho within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:15.9 occ:1.00 OD2 A:ASP237 2.0 17.4 1.0 OD1 A:ASP241 2.1 19.9 1.0 O A:HOH772 2.1 21.3 1.0 O A:HOH626 2.1 21.5 1.0 OD1 A:ASP239 2.2 20.7 1.0 OG A:SER97 2.2 25.5 1.0 CG A:ASP237 3.0 18.3 1.0 CG A:ASP239 3.0 18.4 1.0 CG A:ASP241 3.0 23.5 1.0 OD2 A:ASP239 3.2 22.4 1.0 OD2 A:ASP241 3.4 23.1 1.0 CB A:SER97 3.4 39.0 1.0 OD1 A:ASP237 3.4 16.1 1.0 O A:HOH930 4.1 27.1 1.0 NE A:ARG242 4.1 22.9 1.0 O A:HOH820 4.2 30.5 1.0 CA A:SER97 4.2 42.9 1.0 CB A:ASP237 4.2 17.5 1.0 N A:ASP241 4.3 17.1 1.0 CB A:ASP241 4.4 17.4 1.0 CB A:ASP239 4.5 18.5 1.0 CG A:ARG242 4.6 18.5 1.0 N A:ARG242 4.7 17.8 1.0 O A:HOH977 4.7 55.3 1.0 ND1 A:HIS98 4.7 39.9 1.0 CA A:ASP241 4.7 16.0 1.0 N A:ASP239 4.7 16.5 1.0 NH2 A:ARG242 4.8 25.8 1.0 C A:SER97 4.8 46.3 1.0 CD A:ARG242 4.9 19.4 1.0 C A:ASP241 4.9 16.4 1.0 C A:ASP239 4.9 18.3 1.0 CZ A:ARG242 4.9 24.6 1.0 CA A:ASP239 5.0 15.6 1.0 N A:PHE240 5.0 14.7 1.0

K.M.Stiers, A.C.Graham, J.S.Zhu, D.L.Jakeman, J.C.Nix, L.J.Beamer. Structural and Dynamical Description of the Enzymatic Reaction of A Phosphohexomutase. Struct Dyn. V. 6 24703 2019.
ISSN: ESSN 2329-7778
PubMed: 31041362
DOI: 10.1063/1.5092803