Magnesium in PDB 6o6c: Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion

All present enzymatic activity of Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion:
2.7.7.6;

The structure of Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion (pdb code 6o6c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion, PDB code: 6o6c:

Magnesium binding site 1 out of 1 in the Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Elongation Complex Arrested at A Cpd Lesion within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:34.2 occ:1.00 OD1 A:ASP483 2.0 35.5 1.0 OD1 A:ASP485 2.0 24.3 1.0 OD1 A:ASP481 2.1 44.1 1.0 OD2 A:ASP481 2.2 30.3 1.0 CG A:ASP481 2.5 29.3 1.0 O3' K:G9 2.6 39.2 1.0 CG A:ASP483 2.8 24.2 1.0 CG A:ASP485 2.9 21.4 1.0 OD2 A:ASP483 3.1 28.2 1.0 OD2 A:ASP485 3.3 28.1 1.0 CB A:ASP481 4.0 13.2 1.0 C3' K:G9 4.0 39.2 1.0 CB A:ASP483 4.2 17.1 1.0 CB A:ASP485 4.2 20.1 1.0 N A:ASP483 4.3 18.3 1.0 N A:ASP485 4.3 21.2 1.0 C A:ASP483 4.5 19.5 1.0 CA A:ASP483 4.5 15.4 1.0 CA A:ASP485 4.6 21.4 1.0 NH2 A:ARG446 4.6 28.4 1.0 C A:ASP481 4.7 19.3 1.0 O A:ASP481 4.7 26.3 1.0 O A:ASP483 4.7 21.6 1.0 CA A:ASP481 4.7 14.7 1.0 C4' K:G9 4.7 39.2 1.0 N A:ASP481 4.7 24.9 1.0 N A:GLY484 4.8 22.4 1.0 C5' K:G9 4.9 39.2 1.0

I.Lahiri, J.Xu, B.G.Han, J.Oh, D.Wang, F.Dimaio, A.E.Leschziner. 3.1 Angstrom Structure of Yeast Rna Polymerase II Elongation Complex Stalled at A Cyclobutane Pyrimidine Dimer Lesion Solved Using Streptavidin Affinity Grids. J.Struct.Biol. V. 207 270 2019.
ISSN: ESSN 1095-8657
PubMed: 31200019
DOI: 10.1016/J.JSB.2019.06.004