Magnesium in PDB 6oem: Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0):
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) (pdb code 6oem). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0), PDB code: 6oem:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:0.2 occ:1.00 OD2 A:ASP708 1.9 98.3 1.0 OD1 A:ASP600 1.9 93.8 1.0 CG A:ASP708 2.8 98.3 1.0 CG A:ASP600 3.0 93.8 1.0 OD1 A:ASP708 3.4 98.3 1.0 OD2 A:ASP600 3.6 93.8 1.0 CB A:ASP708 3.9 98.3 1.0 CB A:ASP600 4.2 93.8 1.0 OE2 A:GLU662 4.3 0.6 1.0 OE1 A:GLU662 4.7 0.6 1.0 CD A:GLU662 4.9 0.6 1.0 CA A:ASP600 4.9 93.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1101 b:0.4 occ:1.00 OD2 C:ASP708 1.9 88.7 1.0 OD1 C:ASP600 1.9 88.7 1.0 CG C:ASP708 3.0 88.7 1.0 CG C:ASP600 3.0 88.7 1.0 OD2 C:ASP600 3.5 88.7 1.0 OD1 C:ASP708 3.7 88.7 1.0 CB C:ASP708 3.9 88.7 1.0 CB C:ASP600 4.3 88.7 1.0 OE1 C:GLU662 4.7 98.9 1.0 OE2 C:GLU662 4.8 98.9 1.0 CA C:ASP600 4.9 88.7 1.0 N C:GLY601 5.0 89.8 1.0

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cutting Antiparallel Dna Strands in A Single Active Site Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985