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Magnesium in PDB 6p22: Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc

Enzymatic activity of Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc

All present enzymatic activity of Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc:
3.2.1.17;

Protein crystallography data

The structure of Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc, PDB code: 6p22 was solved by S.A.Buth, M.M.Shneider, P.G.Leiman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.21 / 2.29
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.305, 56.963, 222.994, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc (pdb code 6p22). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc, PDB code: 6p22:

Magnesium binding site 1 out of 1 in 6p22

Go back to Magnesium Binding Sites List in 6p22
Magnesium binding site 1 out of 1 in the Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:48.3
occ:1.00
 O A:HOH706 2.0 45.9 1.0
O C:HOH702 2.1 46.1 1.0
O B:HOH706 2.1 51.3 1.0
O A:HOH725 2.1 45.3 1.0
O B:HOH703 2.1 45.9 1.0
O C:HOH703 2.2 43.2 1.0
OE2 B:GLU552 3.8 37.7 1.0
OE2 A:GLU552 3.9 41.3 1.0
OE2 C:GLU552 3.9 34.9 1.0
OE1 B:GLU552 4.0 36.0 1.0
OE1 C:GLU552 4.0 31.3 1.0
OE1 A:GLU552 4.1 42.2 1.0
HE3 C:MET557 4.2 38.8 1.0
HE3 A:MET557 4.3 39.7 1.0
CD B:GLU552 4.3 39.9 1.0
HE1 C:MET557 4.4 38.8 1.0
CD C:GLU552 4.4 32.0 1.0
CD A:GLU552 4.4 43.2 1.0
HE3 B:MET557 4.4 52.3 1.0
HE1 A:MET557 4.5 39.7 1.0
HE1 B:MET557 4.5 52.3 1.0
HZ2 A:TRP550 4.6 36.7 1.0
HZ2 B:TRP550 4.6 35.1 1.0
HZ2 C:TRP550 4.7 39.6 1.0
CE C:MET557 4.8 32.3 1.0
CE A:MET557 4.8 33.1 1.0
HE1 B:TRP550 4.9 40.7 1.0
CE B:MET557 4.9 43.6 1.0
CZ2 B:TRP550 5.0 29.2 1.0
CZ2 A:TRP550 5.0 30.6 1.0

Reference:

S.A.Buth, M.M.Shneider, P.G.Leiman. Photorhabdus Virulence Cassette (Pvc) Paar Repeat Protein PVC10 in Complex with A T4 GP5 Beta-Helix Fragment Modified to Mimic PVC8, the Central Spike Protein of Pvc To Be Published.
Page generated: Wed Aug 13 13:34:06 2025

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