Magnesium in PDB 6pe0: MSP1 (E214Q)-Substrate Complex

The binding sites of Magnesium atom in the MSP1 (E214Q)-Substrate Complex (pdb code 6pe0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the MSP1 (E214Q)-Substrate Complex, PDB code: 6pe0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the MSP1 (E214Q)-Substrate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of MSP1 (E214Q)-Substrate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:48.4 occ:1.00 O2B A:ATP501 2.0 62.5 1.0 OG1 A:THR161 2.0 59.3 1.0 O3G A:ATP501 2.8 62.5 1.0 O3B A:ATP501 2.9 62.5 1.0 PB A:ATP501 3.0 62.5 1.0 CB A:THR161 3.2 59.3 1.0 NE2 A:GLN214 3.2 61.2 1.0 PG A:ATP501 3.5 62.5 1.0 O1A A:ATP501 3.7 62.5 1.0 O3A A:ATP501 3.9 62.5 1.0 CG2 A:THR161 4.0 59.3 1.0 O2G A:ATP501 4.1 62.5 1.0 OD1 A:ASP213 4.1 60.5 1.0 OD2 A:ASP213 4.3 60.5 1.0 O1B A:ATP501 4.3 62.5 1.0 CA A:THR161 4.3 59.3 1.0 N A:THR161 4.3 59.3 1.0 CD A:GLN214 4.4 61.2 1.0 PA A:ATP501 4.4 62.5 1.0 OD1 B:ASP242 4.5 49.4 1.0 NH1 B:ARG275 4.6 43.0 1.0 CG A:ASP213 4.6 60.5 1.0 NH1 B:ARG274 4.7 52.0 1.0 O1G A:ATP501 4.7 62.5 1.0 O B:ASP242 4.9 49.4 1.0 O B:MET238 4.9 49.4 1.0

Magnesium binding site 2 out of 5 in the MSP1 (E214Q)-Substrate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of MSP1 (E214Q)-Substrate Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:31.1 occ:1.00 O1B B:ATP501 2.0 34.2 1.0 OG1 B:THR161 2.1 34.4 1.0 O1G B:ATP501 2.1 34.2 1.0 O2B B:ATP501 2.3 34.2 1.0 PB B:ATP501 2.4 34.2 1.0 CB B:THR161 3.2 34.4 1.0 PG B:ATP501 3.3 34.2 1.0 O3B B:ATP501 3.3 34.2 1.0 O1A B:ATP501 3.6 34.2 1.0 O3A B:ATP501 3.9 34.2 1.0 O C:ASP242 4.1 33.3 1.0 CG2 B:THR161 4.1 34.4 1.0 NH1 C:ARG274 4.1 31.6 1.0 OD2 B:ASP213 4.2 36.7 1.0 O3G B:ATP501 4.2 34.2 1.0 NE2 B:GLN214 4.2 34.0 1.0 N B:THR161 4.2 34.4 1.0 NH1 C:ARG275 4.2 27.1 1.0 CA B:THR161 4.3 34.4 1.0 OD1 B:ASP213 4.3 36.7 1.0 PA B:ATP501 4.3 34.2 1.0 O2G B:ATP501 4.4 34.2 1.0 CG B:LYS160 4.6 32.1 1.0 CG B:ASP213 4.7 36.7 1.0

Magnesium binding site 3 out of 5 in the MSP1 (E214Q)-Substrate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of MSP1 (E214Q)-Substrate Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:36.7 occ:1.00 O2B C:ATP501 2.0 53.2 1.0 OG1 C:THR161 2.0 37.2 1.0 O1G C:ATP501 2.4 53.2 1.0 PB C:ATP501 3.2 53.2 1.0 O3G C:ATP501 3.2 53.2 1.0 PG C:ATP501 3.3 53.2 1.0 CB C:THR161 3.4 37.2 1.0 OD1 C:ASP213 3.5 32.5 1.0 OD2 C:ASP213 3.6 32.5 1.0 O3B C:ATP501 3.7 53.2 1.0 O1B C:ATP501 3.8 53.2 1.0 OE1 C:GLN214 3.9 32.9 1.0 CG C:ASP213 4.0 32.5 1.0 CG2 C:THR161 4.2 37.2 1.0 NH1 D:ARG275 4.3 31.9 1.0 N C:THR161 4.3 37.2 1.0 O1A C:ATP501 4.3 53.2 1.0 CA C:THR161 4.3 37.2 1.0 O3A C:ATP501 4.5 53.2 1.0 O2G C:ATP501 4.7 53.2 1.0 O D:MET238 4.7 36.5 1.0 CD C:GLN214 4.7 32.9 1.0 OD1 D:ASP242 4.8 39.1 1.0 CG C:GLN214 5.0 32.9 1.0

Magnesium binding site 4 out of 5 in the MSP1 (E214Q)-Substrate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of MSP1 (E214Q)-Substrate Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:42.9 occ:1.00 O2B D:ATP501 2.0 53.2 1.0 OG1 D:THR161 2.0 35.4 1.0 O3G D:ATP501 2.4 53.2 1.0 O1G D:ATP501 3.3 53.2 1.0 PG D:ATP501 3.3 53.2 1.0 CB D:THR161 3.3 35.4 1.0 PB D:ATP501 3.4 53.2 1.0 OD2 D:ASP213 3.5 38.8 1.0 O3B D:ATP501 3.8 53.2 1.0 O1A D:ATP501 3.8 53.2 1.0 OD1 D:ASP213 3.9 38.8 1.0 CG D:ASP213 4.1 38.8 1.0 CG2 D:THR161 4.2 35.4 1.0 N D:THR161 4.3 35.4 1.0 CA D:THR161 4.3 35.4 1.0 O3A D:ATP501 4.3 53.2 1.0 NH1 E:ARG275 4.4 32.1 1.0 O1B D:ATP501 4.5 53.2 1.0 O E:ASP242 4.6 40.9 1.0 O2G D:ATP501 4.7 53.2 1.0 PA D:ATP501 4.7 53.2 1.0 NE2 D:GLN214 4.8 41.0 1.0

Magnesium binding site 5 out of 5 in the MSP1 (E214Q)-Substrate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of MSP1 (E214Q)-Substrate Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:34.1 occ:1.00 O2B E:ATP501 2.0 37.2 1.0 OG1 E:THR161 2.0 36.9 1.0 OD2 E:ASP213 2.7 34.7 1.0 CB E:THR161 3.0 36.9 1.0 NE2 E:GLN214 3.2 33.9 1.0 O3G E:ATP501 3.3 37.2 1.0 CG2 E:THR161 3.4 36.9 1.0 PB E:ATP501 3.5 37.2 1.0 CG E:ASP213 3.5 34.7 1.0 OD1 E:ASP213 3.5 34.7 1.0 O F:ASP242 3.8 46.2 1.0 O1A E:ATP501 3.9 37.2 1.0 O3B E:ATP501 4.1 37.2 1.0 O3A E:ATP501 4.1 37.2 1.0 O F:MET238 4.2 43.8 1.0 CD E:GLN214 4.3 33.9 1.0 CA E:THR161 4.4 36.9 1.0 PG E:ATP501 4.4 37.2 1.0 OD1 F:ASP242 4.5 46.2 1.0 NH1 F:ARG275 4.6 42.4 1.0 PA E:ATP501 4.6 37.2 1.0 O1B E:ATP501 4.6 37.2 1.0 OE1 E:GLN214 4.7 33.9 1.0 N E:THR161 4.7 36.9 1.0 C F:ASP242 4.9 46.2 1.0 CB E:ASP213 4.9 34.7 1.0

L.Wang, A.Myasnikov, X.Pan, P.Walter. Structure of the Aaa Protein MSP1 Reveals Mechanism of Mislocalized Membrane Protein Extraction. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 31999255
DOI: 10.7554/ELIFE.54031