Atomistry » Magnesium » PDB 6q71-6qj6 » 6qdc
Atomistry »
  Magnesium »
    PDB 6q71-6qj6 »
      6qdc »

Magnesium in PDB 6qdc: Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101

Enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101

All present enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101:
2.3.1.97;

Protein crystallography data

The structure of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101, PDB code: 6qdc was solved by J.A.Brannigan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.00 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.672, 90.638, 53.113, 90.00, 111.75, 90.00
R / Rfree (%) 17.1 / 20.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101 (pdb code 6qdc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101, PDB code: 6qdc:

Magnesium binding site 1 out of 1 in 6qdc

Go back to Magnesium Binding Sites List in 6qdc
Magnesium binding site 1 out of 1 in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000101 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:20.7
occ:1.00
 O A:LEU175 2.8 16.5 1.0
O1A A:MYA1001 2.8 11.9 1.0
N A:LYS178 2.9 15.4 1.0
O5A A:MYA1001 3.0 13.4 1.0
N A:LEU180 3.1 12.5 1.0
N A:ARG179 3.4 14.0 1.0
N A:GLU177 3.4 14.2 1.0
CB A:LEU180 3.4 14.5 1.0
CA A:LYS178 3.5 17.2 1.0
C A:LYS178 3.6 16.4 1.0
P1A A:MYA1001 3.6 12.3 1.0
CB A:LYS178 3.7 19.2 1.0
O2A A:MYA1001 3.7 13.4 1.0
C A:ARG176 3.7 16.1 1.0
CA A:LEU180 3.8 13.3 1.0
C A:LEU175 3.9 14.6 1.0
CA A:ARG176 4.0 15.0 1.0
C A:GLU177 4.0 17.1 1.0
CG1 A:VAL171 4.1 12.6 1.0
C A:ARG179 4.1 15.5 1.0
P2A A:MYA1001 4.1 12.3 1.0
CA A:GLU177 4.2 16.6 1.0
CA A:ARG179 4.2 14.3 1.0
N A:ALA181 4.3 12.2 1.0
O3A A:MYA1001 4.3 12.1 1.0
O A:LYS178 4.4 19.2 1.0
N A:ARG176 4.4 14.9 1.0
O A:ARG176 4.5 17.9 1.0
C A:LEU180 4.6 12.6 1.0
CG A:LYS178 4.6 21.9 1.0
O6A A:MYA1001 4.7 11.5 1.0
CG2 A:VAL171 4.7 11.3 1.0
CG A:LEU180 4.8 17.2 1.0
CB A:VAL171 4.9 10.1 1.0
CD2 A:LEU180 5.0 17.5 1.0

Reference:

J.A.Brannigan, J.A.Brannigan. N/A N/A.
Page generated: Tue Oct 1 15:27:23 2024

Last articles

Mg in 5NOG
Mg in 5NO9
Mg in 5NNW
Mg in 5NO1
Mg in 5NLM
Mg in 5NMX
Mg in 5NMW
Mg in 5NH7
Mg in 5NKL
Mg in 5NM5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy