Atomistry » Magnesium » PDB 6q71-6qj6 » 6qdd
Atomistry »
  Magnesium »
    PDB 6q71-6qj6 »
      6qdd »

Magnesium in PDB 6qdd: Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105

Enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105

All present enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105:
2.3.1.97;

Protein crystallography data

The structure of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105, PDB code: 6qdd was solved by J.A.Brannigan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.154, 90.849, 53.263, 90.00, 112.79, 90.00
R / Rfree (%) 18.1 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105 (pdb code 6qdd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105, PDB code: 6qdd:

Magnesium binding site 1 out of 1 in 6qdd

Go back to Magnesium Binding Sites List in 6qdd
Magnesium binding site 1 out of 1 in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:30.9
occ:1.00
 O A:LEU175 2.7 28.9 1.0
O1A A:MYA1001 2.8 23.4 1.0
N A:LYS178 2.9 26.6 1.0
O5A A:MYA1001 3.0 20.3 1.0
N A:LEU180 3.1 24.7 1.0
N A:ARG179 3.3 29.7 1.0
CB A:LEU180 3.4 25.4 1.0
N A:GLU177 3.4 25.9 1.0
C A:LYS178 3.5 28.4 1.0
CA A:LYS178 3.5 29.9 1.0
CB A:LYS178 3.7 30.4 1.0
P1A A:MYA1001 3.7 22.7 1.0
C A:ARG176 3.7 27.5 1.0
CA A:LEU180 3.8 25.1 1.0
O2A A:MYA1001 3.8 22.6 1.0
C A:LEU175 3.8 24.5 1.0
CA A:ARG176 3.9 23.6 1.0
C A:GLU177 4.0 29.9 1.0
CG1 A:VAL171 4.1 17.7 1.0
C A:ARG179 4.1 30.0 1.0
CA A:GLU177 4.1 26.9 1.0
P2A A:MYA1001 4.2 20.0 1.0
CA A:ARG179 4.2 29.1 1.0
N A:ALA181 4.3 20.1 1.0
O A:LYS178 4.3 31.4 1.0
N A:ARG176 4.3 24.4 1.0
O3A A:MYA1001 4.4 20.4 1.0
O A:ARG176 4.5 30.8 1.0
C A:LEU180 4.6 22.6 1.0
CG A:LYS178 4.7 36.9 1.0
CG A:LEU180 4.7 26.2 1.0
O6A A:MYA1001 4.8 19.0 1.0
CG2 A:VAL171 4.8 20.7 1.0
CB A:VAL171 4.8 17.7 1.0
CD2 A:LEU180 5.0 25.4 1.0

Reference:

J.A.Brannigan, J.A.Brannigan. N/A N/A.
Page generated: Tue Oct 1 15:27:27 2024

Last articles

Mg in 3BC1
Mg in 3BB1
Mg in 3BBF
Mg in 3B9T
Mg in 3BBP
Mg in 3B97
Mg in 3BB4
Mg in 3BB3
Mg in 3B9R
Mg in 3B8I
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy