Magnesium in PDB 6rak: Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation

The structure of Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation also contains other interesting chemical elements:

Vanadium

(V)

1 atom

The binding sites of Magnesium atom in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation (pdb code 6rak). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation, PDB code: 6rak:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:34.0 occ:1.00 O3G A:AOV701 2.2 38.3 1.0 O2B A:AOV701 2.2 38.3 1.0 OG1 A:THR400 2.4 30.1 1.0 OE1 A:GLN441 2.4 36.1 1.0 CD A:GLN441 3.3 36.1 1.0 OD1 A:ASP522 3.4 36.0 1.0 CB A:THR400 3.6 30.1 1.0 PB A:AOV701 3.6 38.3 1.0 VG A:AOV701 3.7 38.3 1.0 CG A:GLN441 4.1 36.1 1.0 OD2 A:ASP522 4.1 36.0 1.0 O4G A:AOV701 4.2 38.3 1.0 O3B A:AOV701 4.2 38.3 1.0 NE2 A:GLN441 4.2 36.1 1.0 CG A:ASP522 4.2 36.0 1.0 O1B A:AOV701 4.2 38.3 1.0 N A:THR400 4.3 30.1 1.0 O2G A:AOV701 4.4 38.3 1.0 CB A:GLN441 4.5 36.1 1.0 CA A:THR400 4.5 30.1 1.0 CG2 A:THR400 4.6 30.1 1.0 O1A A:AOV701 4.6 38.3 1.0 O3A A:AOV701 4.8 38.3 1.0 OE1 A:GLU523 4.9 38.4 1.0 N B:GLY477 5.0 29.2 1.0

Magnesium binding site 2 out of 2 in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Occluded Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:26.0 occ:1.00 OG B:SER378 2.1 26.7 1.0 OE1 B:GLN419 2.1 31.3 1.0 O2G B:ATP601 2.2 26.6 1.0 O3B B:ATP601 2.2 26.6 1.0 PG B:ATP601 2.7 26.6 1.0 CD B:GLN419 3.1 31.3 1.0 CB B:SER378 3.2 26.7 1.0 NE2 B:GLN419 3.5 31.3 1.0 O1G B:ATP601 3.6 26.6 1.0 O2A B:ATP601 3.6 26.6 1.0 PB B:ATP601 3.6 26.6 1.0 O3G B:ATP601 3.9 26.6 1.0 O3A B:ATP601 3.9 26.6 1.0 OD1 B:ASP499 4.0 29.9 1.0 N B:SER378 4.0 26.7 1.0 CA B:SER378 4.2 26.7 1.0 PA B:ATP601 4.3 26.6 1.0 O2B B:ATP601 4.4 26.6 1.0 CG B:GLN419 4.5 31.3 1.0 O1B B:ATP601 4.5 26.6 1.0 CB B:GLN419 4.7 31.3 1.0 OG1 A:THR499 4.7 29.4 1.0 CB A:THR499 4.8 29.4 1.0 OD2 B:ASP499 4.8 29.9 1.0 CG B:ASP499 4.8 29.9 1.0 O1A B:ATP601 4.9 26.6 1.0 CB B:LYS377 5.0 22.0 1.0 C B:LYS377 5.0 22.0 1.0

S.Hofmann, D.Januliene, A.R.Mehdipour, C.Thomas, E.Stefan, S.Bruchert, B.T.Kuhn, E.R.Geertsma, G.Hummer, R.Tampe, A.Moeller. Conformation Space of A Heterodimeric Abc Exporter Under Turnover Conditions. Nature V. 571 580 2019.
ISSN: ESSN 1476-4687
PubMed: 31316210
DOI: 10.1038/S41586-019-1391-0