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Magnesium in PDB 6rcl: Crystal Structure of REXO2-D199A-Aa

Protein crystallography data

The structure of Crystal Structure of REXO2-D199A-Aa, PDB code: 6rcl was solved by H.Spahr, T.J.Nicholls, N.G.Larsson, C.M.Gustafsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.98 / 1.97
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 35.613, 125.835, 167.910, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 25

Other elements in 6rcl:

The structure of Crystal Structure of REXO2-D199A-Aa also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of REXO2-D199A-Aa (pdb code 6rcl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of REXO2-D199A-Aa, PDB code: 6rcl:

Magnesium binding site 1 out of 1 in 6rcl

Go back to Magnesium Binding Sites List in 6rcl
Magnesium binding site 1 out of 1 in the Crystal Structure of REXO2-D199A-Aa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of REXO2-D199A-Aa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg101

b:51.5
occ:1.00
OD1 A:ASP47 2.2 49.7 1.0
O A:HOH428 2.3 53.6 1.0
O A:HOH403 2.4 51.8 1.0
O A:HOH487 2.4 45.9 1.0
OP1 C:A2 2.7 60.2 1.0
O3' C:A1 2.7 58.3 1.0
P C:A2 3.3 58.3 1.0
CG A:ASP47 3.4 50.8 1.0
O A:HOH475 3.8 47.5 1.0
O A:LEU48 3.9 51.1 1.0
C3' C:A1 4.0 58.7 1.0
O A:HOH432 4.0 45.3 1.0
ZN A:ZN301 4.0 62.5 1.0
OD2 A:ASP47 4.1 50.1 1.0
OD1 A:ASP147 4.2 53.6 1.0
C4' C:A1 4.2 57.9 1.0
O2' C:A1 4.2 62.9 1.0
O5' C:A2 4.3 58.6 1.0
C5' C:A2 4.3 59.6 1.0
OP2 C:A2 4.4 57.8 1.0
OD2 A:ASP147 4.4 59.9 1.0
CB A:ASP47 4.6 47.3 1.0
O A:ASN142 4.6 45.3 1.0
OE1 A:GLU49 4.7 75.0 1.0
O C:HOH202 4.7 52.1 1.0
C2' C:A1 4.7 61.0 1.0
CG A:ASP147 4.7 55.0 1.0
N A:LEU48 4.8 48.9 1.0
C5' C:A1 4.8 55.5 1.0
CA A:ASP47 4.9 43.8 1.0

Reference:

T.J.Nicholls, H.Spahr, S.Jiang, S.J.Siira, C.Koolmeister, S.Sharma, J.H.K.Kauppila, M.Jiang, V.Kaever, O.Rackham, A.Chabes, M.Falkenberg, A.Filipovska, N.G.Larsson, C.M.Gustafsson. Dinucleotide Degradation By REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell 2019.
ISSN: ISSN 1097-2765
PubMed: 31588022
DOI: 10.1016/J.MOLCEL.2019.09.010
Page generated: Tue Oct 1 16:41:18 2024

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