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Magnesium in PDB 6rgx: Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium

Protein crystallography data

The structure of Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium, PDB code: 6rgx was solved by W.Hinrichs, G.J.Palm, L.Berndt, B.Girbardt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.98 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.378, 68.378, 180.008, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 24.3

Other elements in 6rgx:

The structure of Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium also contains other interesting chemical elements:

Chlorine (Cl) 10 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium (pdb code 6rgx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium, PDB code: 6rgx:

Magnesium binding site 1 out of 1 in 6rgx

Go back to Magnesium Binding Sites List in 6rgx
Magnesium binding site 1 out of 1 in the Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:20.4
occ:1.00
O12 B:DXT301 1.9 22.4 1.0
O11 B:DXT301 2.0 20.2 1.0
O B:HOH467 2.1 18.6 1.0
O B:HOH452 2.1 18.9 1.0
O A:HOH471 2.2 18.3 1.0
NE2 B:HIS100 2.3 14.6 1.0
C12 B:DXT301 3.0 22.6 1.0
C11 B:DXT301 3.0 21.3 1.0
CE1 B:HIS100 3.2 15.2 1.0
CD2 B:HIS100 3.4 14.6 1.0
C5B B:DXT301 3.4 22.2 1.0
O B:HOH443 3.9 22.6 1.0
OG1 B:THR103 4.1 20.4 1.0
O10 B:DXT301 4.1 22.7 1.0
OE2 A:GLU147 4.1 32.0 1.0
O B:THR103 4.2 20.5 1.0
C4B B:DXT301 4.3 22.7 1.0
O B:HOH466 4.3 28.7 1.0
C6B B:DXT301 4.3 21.9 1.0
O13 B:DXT301 4.3 21.4 1.0
ND1 B:HIS100 4.4 15.4 1.0
CG B:HIS100 4.5 15.1 1.0
OE1 A:GLU147 4.7 29.0 1.0
C10 B:DXT301 4.7 22.3 1.0
C B:THR103 4.7 21.7 1.0
O1 B:DXT301 4.8 23.8 1.0
CD A:GLU147 4.8 26.8 1.0
C5A B:DXT301 4.9 21.9 1.0

Reference:

W.Hinrichs, G.J.Palm, L.Berndt, B.Girbardt. Tetr(D) N82A Mutant in Complex with Doxycycline and Magnesium To Be Published.
Page generated: Tue Oct 1 16:59:14 2024

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