Atomistry » Magnesium » PDB 6rf2-6rl3 » 6rh3
Atomistry »
  Magnesium »
    PDB 6rf2-6rl3 »
      6rh3 »

Magnesium in PDB 6rh3: Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate

Enzymatic activity of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate

All present enzymatic activity of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate:
2.7.7.6;

Other elements in 6rh3:

The structure of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate (pdb code 6rh3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate, PDB code: 6rh3:

Magnesium binding site 1 out of 1 in 6rh3

Go back to Magnesium Binding Sites List in 6rh3
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E. Coli Rna Polymerase Elongation Complex Bound to Ctp Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1504

b:76.5
occ:1.00
O2A D:CTP1503 1.9 72.8 1.0
O3B D:CTP1503 1.9 72.8 1.0
O2B D:CTP1503 2.2 72.8 1.0
PB D:CTP1503 2.3 72.8 1.0
OD2 D:ASP460 2.4 55.5 1.0
PA D:CTP1503 2.4 72.8 1.0
OD2 D:ASP462 2.6 54.6 1.0
O5' D:CTP1503 2.6 72.8 1.0
O3A D:CTP1503 2.7 72.8 1.0
PG D:CTP1503 3.2 72.8 1.0
CG D:ASP460 3.3 55.5 1.0
OD1 D:ASP460 3.5 55.5 1.0
CG D:ASP462 3.5 54.6 1.0
O1G D:CTP1503 3.6 72.8 1.0
O1B D:CTP1503 3.7 72.8 1.0
C5' D:CTP1503 3.7 72.8 1.0
OD1 D:ASP462 3.8 54.6 1.0
O2G D:CTP1503 3.8 72.8 1.0
O1A D:CTP1503 3.9 72.8 1.0
O3G D:CTP1503 4.4 72.8 1.0
C4' D:CTP1503 4.6 72.8 1.0
CB D:ASP460 4.7 55.5 1.0
CB D:ASP462 4.9 54.6 1.0

Reference:

M.Abdelkareem, C.Saint-Andre, M.Takacs, G.Papai, C.Crucifix, X.Guo, J.Ortiz, A.Weixlbaumer. Structural Basis of Transcription: Rna Polymerase Backtracking and Its Reactivation. Mol.Cell V. 75 298 2019.
ISSN: ISSN 1097-2765
PubMed: 31103420
DOI: 10.1016/J.MOLCEL.2019.04.029
Page generated: Tue Oct 1 16:59:18 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy