Magnesium in PDB 6rla: Structure of the Dynein-2 Complex; Motor Domains

The binding sites of Magnesium atom in the Structure of the Dynein-2 Complex; Motor Domains (pdb code 6rla). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Dynein-2 Complex; Motor Domains, PDB code: 6rla:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the Dynein-2 Complex; Motor Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Dynein-2 Complex; Motor Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4403 b:52.8 occ:1.00 O2B A:ATP4402 2.1 59.4 1.0 OE2 A:GLU2095 2.1 52.0 1.0 OG A:SER1986 2.3 54.5 1.0 CB A:SER1986 2.5 54.5 1.0 O3G A:ATP4402 2.8 59.4 1.0 CD A:GLU2095 3.1 52.0 1.0 PB A:ATP4402 3.3 59.4 1.0 O3B A:ATP4402 3.3 59.4 1.0 O2A A:ATP4402 3.3 59.4 1.0 OE1 A:GLU2095 3.4 52.0 1.0 PG A:ATP4402 3.6 59.4 1.0 CA A:SER1986 3.7 54.5 1.0 N A:SER1986 3.8 54.5 1.0 O2G A:ATP4402 4.0 59.4 1.0 PA A:ATP4402 4.1 59.4 1.0 O1A A:ATP4402 4.2 59.4 1.0 O3A A:ATP4402 4.2 59.4 1.0 O1B A:ATP4402 4.4 59.4 1.0 CG A:GLU2095 4.5 52.0 1.0 OD2 A:ASP2055 4.6 47.0 1.0 CG A:LYS1985 4.7 52.2 1.0 C A:LYS1985 4.7 52.2 1.0 C A:SER1986 4.8 54.5 1.0 O1G A:ATP4402 5.0 59.4 1.0 NZ A:LYS1985 5.0 52.2 1.0

Magnesium binding site 2 out of 2 in the Structure of the Dynein-2 Complex; Motor Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Dynein-2 Complex; Motor Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg4403 b:53.4 occ:1.00 O2B B:ATP4402 2.1 58.9 1.0 OE2 B:GLU2095 2.1 52.1 1.0 OG B:SER1986 2.3 54.3 1.0 CB B:SER1986 2.5 54.3 1.0 O3G B:ATP4402 2.8 58.9 1.0 CD B:GLU2095 3.1 52.1 1.0 PB B:ATP4402 3.3 58.9 1.0 O3B B:ATP4402 3.3 58.9 1.0 O2A B:ATP4402 3.3 58.9 1.0 OE1 B:GLU2095 3.4 52.1 1.0 PG B:ATP4402 3.6 58.9 1.0 CA B:SER1986 3.7 54.3 1.0 N B:SER1986 3.8 54.3 1.0 O2G B:ATP4402 4.0 58.9 1.0 PA B:ATP4402 4.1 58.9 1.0 O1A B:ATP4402 4.2 58.9 1.0 O3A B:ATP4402 4.2 58.9 1.0 O1B B:ATP4402 4.4 58.9 1.0 CG B:GLU2095 4.5 52.1 1.0 OD2 B:ASP2055 4.6 47.3 1.0 CG B:LYS1985 4.7 52.0 1.0 C B:LYS1985 4.7 52.0 1.0 C B:SER1986 4.8 54.3 1.0 O1G B:ATP4402 5.0 58.9 1.0 NZ B:LYS1985 5.0 52.0 1.0

K.Toropova, R.Zalyte, A.G.Mukhopadhyay, M.Mladenov, A.P.Carter, A.J.Roberts. Structure of the Dynein-2 Complex and Its Assembly with Intraflagellar Transport Trains. Nat.Struct.Mol.Biol. V. 26 823 2019.
ISSN: ESSN 1545-9985
PubMed: 31451806
DOI: 10.1038/S41594-019-0286-Y