Magnesium in PDB 6rzb: Cryo-Em Structure of Mouse Cytoplasmic Dynein-1 Microtubule Binding Domain Bound to Microtubules

The binding sites of Magnesium atom in the Cryo-Em Structure of Mouse Cytoplasmic Dynein-1 Microtubule Binding Domain Bound to Microtubules (pdb code 6rzb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Mouse Cytoplasmic Dynein-1 Microtubule Binding Domain Bound to Microtubules, PDB code: 6rzb:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Mouse Cytoplasmic Dynein-1 Microtubule Binding Domain Bound to Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mouse Cytoplasmic Dynein-1 Microtubule Binding Domain Bound to Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:56.1 occ:1.00 OE1 A:GLU71 2.1 0.1 1.0 O3G A:GTP501 2.2 48.7 1.0 O1B A:GTP501 2.3 42.5 1.0 O2G A:GTP501 2.5 60.9 1.0 PG A:GTP501 2.8 47.6 1.0 CD A:GLU71 3.1 0.7 1.0 PB A:GTP501 3.4 42.1 1.0 O3B A:GTP501 3.4 43.5 1.0 CB A:GLN11 3.5 44.2 1.0 CB A:GLU71 3.6 0.1 1.0 NE2 A:GLN11 3.6 42.8 1.0 CG A:GLU71 3.9 0.4 1.0 OD2 A:ASP69 3.9 0.4 1.0 OE2 A:GLU71 3.9 0.8 1.0 O3A A:GTP501 3.9 60.6 1.0 O1G A:GTP501 4.2 43.3 1.0 N A:GLN11 4.2 67.3 1.0 OD1 A:ASP69 4.3 0.1 1.0 NZ B:LYS252 4.3 81.0 1.0 O1A A:GTP501 4.4 94.3 1.0 CA A:GLN11 4.4 49.8 1.0 CD A:GLN11 4.4 48.8 1.0 CG A:ASP69 4.5 0.8 1.0 CG A:GLN11 4.5 45.3 1.0 CG2 A:VAL74 4.6 71.5 1.0 O2B A:GTP501 4.7 40.2 1.0 OG1 A:THR145 4.8 50.7 1.0 OD2 A:ASP98 4.8 0.6 1.0 PA A:GTP501 4.8 88.1 1.0 O B:ASN247 4.9 62.6 1.0 CB A:ASP98 5.0 0.3 1.0

S.E.Lacey, S.He, S.H.Scheres, A.P.Carter. Cryo-Em of Dynein Microtubule-Binding Domains Shows How An Axonemal Dynein Distorts the Microtubule. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 31264960
DOI: 10.7554/ELIFE.47145