Magnesium in PDB 6s6v: Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs

The structure of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

The binding sites of Magnesium atom in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs (pdb code 6s6v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs, PDB code: 6s6v:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1102 b:46.8 occ:1.00 OG1 C:THR44 2.0 46.6 1.0 OE1 C:GLN155 2.0 52.5 1.0 O3G D:AGS1101 2.0 52.6 1.0 O2B D:AGS1101 2.1 52.6 1.0 CD C:GLN155 3.2 52.5 1.0 CB C:THR44 3.3 46.6 1.0 PG D:AGS1101 3.5 52.6 1.0 PB D:AGS1101 3.5 52.6 1.0 CG2 C:THR44 3.8 46.6 1.0 NE2 C:GLN155 3.8 52.5 1.0 O3B D:AGS1101 4.0 52.6 1.0 O3A D:AGS1101 4.2 52.6 1.0 O2A D:AGS1101 4.3 52.6 1.0 O2G D:AGS1101 4.3 52.6 1.0 OG D:SER952 4.4 53.3 1.0 CG C:GLN155 4.4 52.5 1.0 N C:THR44 4.4 46.6 1.0 CA C:THR44 4.4 46.6 1.0 CB C:GLN155 4.5 52.5 1.0 O1B D:AGS1101 4.5 52.6 1.0 N D:GLY953 4.6 55.5 1.0 OD2 C:ASP983 4.7 57.1 1.0 S1G D:AGS1101 4.8 52.6 1.0 PA D:AGS1101 4.8 52.6 1.0

Magnesium binding site 2 out of 2 in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1102 b:45.7 occ:1.00 OE1 D:GLN155 2.0 50.9 1.0 OG1 D:THR44 2.0 46.5 1.0 O3G C:AGS1101 2.1 51.3 1.0 O2B C:AGS1101 2.1 51.3 1.0 CD D:GLN155 3.2 50.9 1.0 CB D:THR44 3.3 46.5 1.0 PG C:AGS1101 3.5 51.3 1.0 PB C:AGS1101 3.5 51.3 1.0 NE2 D:GLN155 3.7 50.9 1.0 CG2 D:THR44 3.8 46.5 1.0 O3B C:AGS1101 4.0 51.3 1.0 O3A C:AGS1101 4.1 51.3 1.0 OG C:SER952 4.3 50.9 1.0 O2G C:AGS1101 4.4 51.3 1.0 OD1 D:ASP983 4.4 57.0 1.0 N D:THR44 4.4 46.5 1.0 CG D:GLN155 4.4 50.9 1.0 CA D:THR44 4.4 46.5 1.0 CB D:GLN155 4.5 50.9 1.0 N C:GLY953 4.5 51.9 1.0 O1B C:AGS1101 4.5 51.3 1.0 O2A C:AGS1101 4.6 51.3 1.0 S1G C:AGS1101 4.7 51.3 1.0 PA C:AGS1101 4.9 51.3 1.0 OD2 D:ASP983 5.0 57.0 1.0 CG D:ASP983 5.0 57.0 1.0

L.Kashammer, J.H.Saathoff, K.Lammens, F.Gut, J.Bartho, A.Alt, B.Kessler, K.P.Hopfner. Mechanism of Dna End Sensing and Processing By the MRE11-RAD50 Complex. Mol.Cell V. 76 382 2019.
ISSN: ISSN 1097-2765
PubMed: 31492634
DOI: 10.1016/J.MOLCEL.2019.07.035