Atomistry » Magnesium » PDB 6s5d-6sh6 » 6s8k
Atomistry »
  Magnesium »
    PDB 6s5d-6sh6 »
      6s8k »

Magnesium in PDB 6s8k: Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes

Protein crystallography data

The structure of Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes, PDB code: 6s8k was solved by A.Sharma, N.Olieric, M.Steinmetz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.02 / 1.52
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.565, 91.351, 83.221, 90.00, 96.85, 90.00
R / Rfree (%) 17.7 / 20.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes (pdb code 6s8k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes, PDB code: 6s8k:

Magnesium binding site 1 out of 1 in 6s8k

Go back to Magnesium Binding Sites List in 6s8k
Magnesium binding site 1 out of 1 in the Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:19.4
occ:1.00
O2B A:GTP501 2.1 18.9 1.0
O1G A:GTP501 2.1 19.4 1.0
O A:HOH876 2.1 19.7 1.0
O A:HOH672 2.1 20.8 1.0
O A:HOH686 2.1 20.7 1.0
O A:HOH700 2.2 19.5 1.0
PB A:GTP501 3.2 19.1 1.0
PG A:GTP501 3.2 18.6 1.0
O3B A:GTP501 3.5 17.3 1.0
O2G A:GTP501 3.7 19.6 1.0
O3A A:GTP501 3.7 19.1 1.0
NZ B:LYS254 3.8 32.8 1.0
OD1 A:ASP69 4.1 19.8 1.0
CB A:GLN11 4.1 20.8 1.0
OE1 A:GLU71 4.1 33.5 1.0
OD2 A:ASP98 4.2 26.4 1.0
OD2 A:ASP69 4.2 21.2 1.0
N A:GLN11 4.3 19.6 1.0
O3G A:GTP501 4.5 20.2 1.0
O1B A:GTP501 4.5 20.5 1.0
ND2 B:ASN249 4.5 55.8 1.0
O1A A:GTP501 4.5 21.9 1.0
CG A:GLU71 4.5 27.0 1.0
CB A:ASP98 4.6 23.7 1.0
CG A:ASP69 4.6 21.6 1.0
OE1 A:GLN11 4.7 27.3 1.0
CG B:ASN249 4.7 51.4 1.0
PA A:GTP501 4.7 20.1 1.0
CG A:ASP98 4.7 24.1 1.0
CA A:GLN11 4.8 18.8 1.0
CD A:GLU71 4.8 27.8 1.0
OD1 B:ASN249 4.9 52.8 1.0
O A:HOH897 4.9 31.7 1.0

Reference:

G.La Sala, N.Olieric, A.Sharma. Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes Chem V. 5 2019.
ISSN: ESSN 2451-9294
DOI: 10.1016/J.CHEMPR.2019.08.022
Page generated: Tue Oct 1 17:49:01 2024

Last articles

Cl in 3W82
Cl in 3W96
Cl in 3W81
Cl in 3W8F
Cl in 3W8D
Cl in 3W7V
Cl in 3W5F
Cl in 3W78
Cl in 3W7R
Cl in 3W6X
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy