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Magnesium in PDB 6swl: The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus

Protein crystallography data

The structure of The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus, PDB code: 6swl was solved by S.Lansky, N.Lavid, Y.Shoham, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.91 / 2.17
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 130.300, 130.300, 40.510, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 25.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus (pdb code 6swl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus, PDB code: 6swl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6swl

Go back to Magnesium Binding Sites List in 6swl
Magnesium binding site 1 out of 2 in the The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:40.9
occ:1.00
OD2 A:PHD57 2.0 57.2 1.0
O A:HOH306 2.2 53.1 1.0
OP2 A:PHD57 2.2 53.7 0.5
OD1 A:ASP11 2.3 56.1 1.0
O A:ARG59 2.4 50.7 1.0
O A:HOH307 2.6 63.2 1.0
O A:HOH303 2.9 70.8 1.0
CG A:PHD57 3.2 52.5 1.0
CG A:ASP11 3.3 54.3 1.0
OD2 A:ASP11 3.5 57.1 1.0
P A:PHD57 3.5 72.8 0.5
C A:ARG59 3.6 47.0 1.0
OD1 A:PHD57 3.7 57.4 1.0
OD1 A:ASP10 4.3 53.2 1.0
OE1 A:GLU12 4.3 58.3 1.0
OP1 A:PHD57 4.3 64.1 0.5
CG A:MET60 4.3 48.5 1.0
CB A:PHD57 4.4 52.0 1.0
N A:MET60 4.5 49.1 1.0
CA A:ARG59 4.5 52.6 1.0
OP3 A:PHD57 4.5 51.4 0.5
CB A:ARG59 4.6 55.5 1.0
CA A:MET60 4.6 45.8 1.0
N A:ARG59 4.7 50.4 1.0
CB A:ASP11 4.7 47.1 1.0
N A:ASP11 4.8 44.7 1.0
CG A:GLU12 4.9 51.6 1.0
NZ A:LYS107 4.9 61.8 1.0

Magnesium binding site 2 out of 2 in 6swl

Go back to Magnesium Binding Sites List in 6swl
Magnesium binding site 2 out of 2 in the The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:61.2
occ:1.00
O B:HOH302 2.0 82.2 1.0
OP2 B:PHD57 2.3 74.6 1.0
OD1 B:ASP11 2.4 81.3 1.0
O B:ARG59 2.4 70.3 1.0
OD2 B:PHD57 2.5 72.5 1.0
OD2 B:ASP11 2.8 75.6 1.0
CG B:ASP11 2.9 80.0 1.0
CG B:PHD57 3.5 67.2 1.0
C B:ARG59 3.6 72.4 1.0
P B:PHD57 3.7 73.1 1.0
OD1 B:PHD57 3.8 69.2 1.0
OD1 B:ASP10 4.1 76.5 1.0
CG B:MET60 4.3 73.1 1.0
CB B:ASP11 4.4 74.8 1.0
N B:MET60 4.5 76.8 1.0
CA B:ARG59 4.5 71.5 1.0
OP1 B:PHD57 4.5 71.0 1.0
CA B:MET60 4.6 78.4 1.0
OP3 B:PHD57 4.6 66.9 1.0
CB B:ARG59 4.6 73.6 1.0
N B:ASP11 4.6 74.7 1.0
N B:ARG59 4.8 64.6 1.0
CB B:PHD57 4.8 65.5 1.0

Reference:

S.Lansky, N.Lavid, Y.Shoham, G.Shoham. The Rec Domain of Xync, A Response Regulator From Geobacillus Stearothermophilus To Be Published.
Page generated: Tue Oct 1 18:27:31 2024

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