Magnesium in PDB 6tz2: In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State

All present enzymatic activity of In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State:
2.7.7.48;

The binding sites of Magnesium atom in the In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State (pdb code 6tz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State, PDB code: 6tz2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1303 b:90.9 occ:1.00 O2A A:UTP1302 2.1 0.5 1.0 OD2 A:ASP680 2.1 88.6 1.0 OD1 A:ASP681 2.1 86.5 1.0 CG A:ASP681 2.8 86.5 1.0 OD2 A:ASP681 2.9 86.5 1.0 CG A:ASP680 3.2 88.6 1.0 PA A:UTP1302 3.3 0.5 1.0 O3A A:UTP1302 3.5 0.5 1.0 MG A:MG1304 3.6 96.5 1.0 OD1 A:ASP547 3.7 82.1 1.0 CB A:ASP680 3.8 88.6 1.0 OD2 A:ASP547 3.9 82.1 1.0 O3' M:U18 4.0 97.9 1.0 CG A:ASP547 4.1 82.1 1.0 O5' A:UTP1302 4.2 0.5 1.0 C A:ASP680 4.2 88.6 1.0 CB A:ASP681 4.3 86.5 1.0 OD1 A:ASP680 4.3 88.6 1.0 O A:ASP680 4.3 88.6 1.0 O1A A:UTP1302 4.4 0.5 1.0 N A:ASP681 4.5 86.5 1.0 OP1 M:U18 4.6 97.9 1.0 CA A:ASP680 4.7 88.6 1.0 CA A:ASP681 4.7 86.5 1.0

Magnesium binding site 2 out of 2 in the In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of In Situ Structure of Bmcpv Rna-Dependent Rna Polymerase at Elongation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1304 b:96.5 occ:1.00 O3A A:UTP1302 2.1 0.5 1.0 O3G A:UTP1302 2.2 0.5 1.0 OD2 A:ASP680 2.2 88.6 1.0 OD1 A:ASP680 2.4 88.6 1.0 CG A:ASP680 2.5 88.6 1.0 O1B A:UTP1302 2.5 0.5 1.0 PB A:UTP1302 2.7 0.5 1.0 PG A:UTP1302 3.3 0.5 1.0 PA A:UTP1302 3.3 0.5 1.0 O A:VAL548 3.3 80.7 1.0 O3B A:UTP1302 3.3 0.5 1.0 O5' A:UTP1302 3.6 0.5 1.0 MG A:MG1303 3.6 90.9 1.0 O2A A:UTP1302 3.7 0.5 1.0 CB A:ASP680 3.8 88.6 1.0 OD1 A:ASP547 3.9 82.1 1.0 O1G A:UTP1302 4.0 0.5 1.0 O2B A:UTP1302 4.1 0.5 1.0 O2G A:UTP1302 4.4 0.5 1.0 C A:VAL548 4.5 80.7 1.0 O1A A:UTP1302 4.6 0.5 1.0 N A:GLY550 4.6 81.6 1.0 OD2 A:ASP547 4.6 82.1 1.0 C5' A:UTP1302 4.6 0.5 1.0 CB A:MET551 4.6 83.5 1.0 N A:MET551 4.7 83.5 1.0 CG A:ASP547 4.7 82.1 1.0

Y.Cui, Y.Zhang, K.Zhou, J.Sun, Z.H.Zhou. Conservative Transcription in Three Steps Visualized in A Double-Stranded Rna Virus. Nat.Struct.Mol.Biol. V. 26 1023 2019.
ISSN: ESSN 1545-9985
PubMed: 31695188
DOI: 10.1038/S41594-019-0320-0