Magnesium in PDB 6u8p: Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna

All present enzymatic activity of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna:
2.1.1.37;

The structure of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna, PDB code: 6u8p was solved by L.Gao, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.33 / 3.05
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	193.303, 193.303, 49.649, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 23.9

The binding sites of Magnesium atom in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna (pdb code 6u8p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna, PDB code: 6u8p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:66.1 occ:1.00 CE A:MET742 2.7 95.7 1.0 O A:ASN717 3.0 68.9 1.0 O A:GLY737 3.2 90.7 1.0 SG A:CYS716 3.4 92.8 1.0 N A:GLY737 3.9 62.6 1.0 O A:PHE735 4.1 66.2 1.0 C A:GLY737 4.1 68.8 1.0 C A:ASN717 4.2 78.1 1.0 CG1 A:VAL719 4.4 63.4 1.0 SD A:MET742 4.5 78.5 1.0 CA A:GLY737 4.6 84.1 1.0 C A:TRP736 4.6 59.2 1.0 CA A:TRP736 4.6 62.2 1.0 CA A:PRO718 4.7 61.8 1.0 C A:PRO718 4.8 60.1 1.0 N A:VAL719 4.8 57.1 1.0 OD1 A:ASN743 4.8 0.4 1.0 N A:ASN717 4.9 74.1 1.0 N A:PRO718 5.0 67.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DNMT3B-DNMT3L in Complex with Cpgpa Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg901 b:60.1 occ:1.00 CE D:MET742 2.8 72.5 1.0 O D:ASN717 3.1 70.0 1.0 O D:GLY737 3.3 85.1 1.0 SG D:CYS716 3.5 87.8 1.0 N D:GLY737 4.2 65.4 1.0 C D:GLY737 4.3 63.7 1.0 C D:ASN717 4.3 71.5 1.0 O D:PHE735 4.4 72.0 1.0 CG1 D:VAL719 4.5 68.5 1.0 SD D:MET742 4.6 70.5 1.0 OD1 D:ASN743 4.7 0.4 1.0 N D:VAL719 4.8 60.7 1.0 CA D:GLY737 4.8 75.2 1.0 CA D:PRO718 4.9 62.6 1.0 C D:TRP736 5.0 59.2 1.0 C D:PRO718 5.0 65.0 1.0 CA D:TRP736 5.0 59.6 1.0

L.Gao, L.Gao, J.Song. N/A N/A.