Magnesium in PDB 6uja: Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1

The structure of Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1 also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Magnesium atom in the Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1 (pdb code 6uja). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1, PDB code: 6uja:

Magnesium binding site 1 out of 1 in the Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2002 b:25.2 occ:1.00 OD1 D:ASP217 1.8 25.9 1.0 OE2 B:GLU212 1.8 23.7 1.0 OG B:SER114 2.0 24.2 1.0 OG B:SER116 2.3 25.9 1.0 CB B:SER114 2.9 24.0 1.0 CD B:GLU212 2.9 22.9 1.0 CG D:ASP217 2.9 26.5 1.0 CB B:SER116 3.3 26.6 1.0 OD2 D:ASP217 3.7 25.7 1.0 CG B:GLU212 3.7 22.8 1.0 OE1 B:GLU212 3.7 23.1 1.0 N B:SER116 3.8 26.9 1.0 CB D:ASP217 3.9 26.7 1.0 CA B:SER114 4.1 26.1 1.0 CA B:SER116 4.1 26.6 1.0 C B:SER114 4.2 26.9 1.0 N B:ALA115 4.3 26.4 1.0 O B:THR210 4.3 23.2 1.0 OD1 B:ASP112 4.4 24.1 1.0 CA D:ASP217 4.4 27.1 1.0 OD2 B:ASP112 4.4 22.9 1.0 OD1 B:ASP243 4.6 24.9 1.0 O B:SER114 4.7 25.9 1.0 OD2 B:ASP243 4.7 25.6 1.0 ND2 B:ASN207 4.7 23.7 1.0 CG B:ASP112 4.8 23.8 1.0 N B:SER114 4.9 24.7 1.0 C B:ALA115 4.9 29.8 1.0 O D:ASP217 4.9 30.3 1.0 C B:SER116 4.9 27.8 1.0 N B:MET117 5.0 28.1 1.0

M.G.Campbell, A.Cormier, S.Ito, R.I.Seed, A.J.Bondesson, J.Lou, J.D.Marks, J.L.Baron, Y.Cheng, S.L.Nishimura. Cryo-Em Reveals Integrin-Mediated Tgf-Beta Activation Without Release From Latent Tgf-Beta. Cell 2020.
ISSN: ISSN 1097-4172
PubMed: 31955848
DOI: 10.1016/J.CELL.2019.12.030