Magnesium in PDB 6un8: Wild Type Ant Bound to Neomycin

The structure of Wild Type Ant Bound to Neomycin, PDB code: 6un8 was solved by M.J.Cuneo, B.Selvaraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.661, 97.794, 102.231, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 19.8

The binding sites of Magnesium atom in the Wild Type Ant Bound to Neomycin (pdb code 6un8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Wild Type Ant Bound to Neomycin, PDB code: 6un8:

Magnesium binding site 1 out of 1 in the Wild Type Ant Bound to Neomycin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wild Type Ant Bound to Neomycin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:43.9 occ:1.00 OE2 B:GLU145 2.1 49.9 1.0 O A:HOH446 2.6 29.3 1.0 O4 A:NMY300 2.6 31.4 1.0 CD B:GLU145 2.8 49.7 1.0 OE1 B:GLU145 2.9 59.8 1.0 C5 A:NMY300 3.0 37.7 1.0 N9 A:NMY300 3.1 23.1 1.0 C4 A:NMY300 3.1 26.4 1.0 C3 A:NMY300 3.3 23.4 1.0 O A:HOH557 3.5 40.6 1.0 OE1 A:GLU76 3.5 22.3 1.0 NZ A:LYS74 3.6 36.0 1.0 O A:HOH538 3.7 35.2 1.0 C6 A:NMY300 3.8 34.1 1.0 OE1 A:GLU52 3.9 33.2 1.0 O1 A:NMY300 4.1 23.8 1.0 O3 A:NMY300 4.2 25.8 1.0 O5 A:NMY300 4.2 29.6 1.0 OE1 A:GLU67 4.2 23.7 1.0 CG B:GLU145 4.3 27.6 1.0 C9 A:NMY300 4.4 19.8 1.0 C2 A:NMY300 4.4 28.8 1.0 C1 A:NMY300 4.4 27.5 1.0 O B:GLU141 4.6 23.7 1.0 C10 A:NMY300 4.6 24.5 1.0 N6 A:NMY300 4.6 42.1 1.0 CE A:LYS74 4.7 27.2 1.0 CD A:GLU76 4.7 24.2 1.0 CB B:GLU145 5.0 18.7 1.0 O A:HOH465 5.0 21.5 1.0 OD2 A:ASP50 5.0 53.2 1.0

B.Selvaraj, S.Kocaman, M.Trifas, E.H.Serpersu, M.J.Cuneo. "Catch and Release": A Variation of the Archetypal Nucleotidyltransfer Reaction Acs Catal V. 10 3548 2020.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.9B05201