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Magnesium in PDB 6uwd: Crystal Structure of Apo Atmm

Protein crystallography data

The structure of Crystal Structure of Apo Atmm, PDB code: 6uwd was solved by S.K.Alvarado, Z.Wang, M.D.Miller, J.S.Thorson, G.N.Philips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.31 / 2.04
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.620, 118.620, 62.443, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 20.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Apo Atmm (pdb code 6uwd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Apo Atmm, PDB code: 6uwd:

Magnesium binding site 1 out of 1 in 6uwd

Go back to Magnesium Binding Sites List in 6uwd
Magnesium binding site 1 out of 1 in the Crystal Structure of Apo Atmm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Apo Atmm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:85.6
occ:0.71
O A:HOH417 2.0 78.9 1.0
O A:HOH442 2.0 84.4 1.0
O A:HOH426 2.1 91.8 1.0
OD1 A:ASN22 2.2 59.7 1.0
O A:HOH463 2.2 80.3 1.0
O A:HOH436 2.3 60.7 1.0
CG A:ASN22 3.2 59.0 1.0
HD22 A:ASN22 3.5 64.4 1.0
O A:HOH421 3.6 56.1 1.0
ND2 A:ASN22 3.7 53.6 1.0
OE1 A:GLU132 4.0 54.7 1.0
HA A:ASN22 4.0 70.9 1.0
O A:GLY17 4.0 60.7 1.0
HB3 A:GLU132 4.1 65.1 1.0
O A:ILE23 4.1 54.6 1.0
O A:HOH472 4.1 73.7 1.0
NE2 A:HIS136 4.2 46.6 1.0
O A:HOH407 4.3 56.9 1.0
O A:GLU132 4.3 55.1 1.0
HE1 A:HIS135 4.3 62.7 1.0
H A:ILE23 4.4 74.1 1.0
O A:HOH476 4.5 71.9 1.0
CB A:ASN22 4.5 57.4 1.0
HD21 A:ASN22 4.6 64.4 1.0
CA A:ASN22 4.6 59.0 1.0
N A:ILE23 4.7 61.7 1.0
HA A:HIS24 4.7 66.5 1.0
C A:ILE23 4.7 58.2 1.0
HE1 A:HIS136 4.8 57.9 1.0
C A:ASN22 4.8 60.3 1.0
HG2 A:GLU132 4.8 65.8 1.0
NE2 A:HIS135 4.8 56.1 1.0
HD23 A:LEU18 4.9 64.3 1.0
CE1 A:HIS135 4.9 52.1 1.0
CE1 A:HIS136 4.9 48.2 1.0
HB2 A:ASN22 5.0 68.9 1.0
CD A:GLU132 5.0 54.0 1.0
CB A:GLU132 5.0 54.2 1.0

Reference:

S.K.Alvarado, M.D.Miller, Z.Wang, J.S.Thorson, G.N.Philips Jr.. Apo Atmm To Be Published.
Page generated: Wed Aug 13 18:45:17 2025

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