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Magnesium in PDB 6v04: DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus

Protein crystallography data

The structure of DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus, PDB code: 6v04 was solved by S.K.Alvarado, M.D.Miller, M.Bhardwaj, J.S.Thorson, S.G.Van Lanen, G.N.Philips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.61 / 1.50
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.171, 73.171, 123.944, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 18.8

Other elements in 6v04:

The structure of DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus (pdb code 6v04). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus, PDB code: 6v04:

Magnesium binding site 1 out of 1 in 6v04

Go back to Magnesium Binding Sites List in 6v04
Magnesium binding site 1 out of 1 in the DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:23.1
occ:1.00
OE1 A:GLN149 2.0 25.5 1.0
CD A:GLN149 3.1 25.0 1.0
HE22 A:GLN149 3.2 37.4 1.0
NE2 A:GLN149 3.6 31.2 1.0
O A:HOH592 4.3 28.3 1.0
O A:HOH637 4.4 27.6 0.5
HB3 A:GLN149 4.4 25.7 1.0
O A:HOH637 4.4 28.9 0.5
HE21 A:GLN149 4.4 37.4 1.0
CG A:GLN149 4.4 22.8 1.0
HD2 A:HIS246 4.6 31.5 1.0
HG2 A:GLN149 4.7 27.4 1.0
CB A:GLN149 4.9 21.4 1.0
CD2 A:HIS246 5.0 26.3 1.0

Reference:

S.K.Alvarado, M.D.Miller, M.Bhardwaj, J.S.Thorson, S.G.Van Lanen, G.N.Philips Jr.. DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus To Be Published.
Page generated: Tue Oct 1 21:22:03 2024

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