Magnesium in PDB 6vik: Crystal Structure of Mouse Xm RABL3 in Complex with Gtpgammss

The structure of Crystal Structure of Mouse Xm RABL3 in Complex with Gtpgammss, PDB code: 6vik was solved by L.Su, D.R.Tomchick, B.Beutler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.87 / 1.70
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.117, 61.117, 224.311, 90.00, 90.00, 120.00
R / Rfree (%)	20.7 / 23.5

The binding sites of Magnesium atom in the Crystal Structure of Mouse Xm RABL3 in Complex with Gtpgammss (pdb code 6vik). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mouse Xm RABL3 in Complex with Gtpgammss, PDB code: 6vik:

Magnesium binding site 1 out of 1 in the Crystal Structure of Mouse Xm RABL3 in Complex with Gtpgammss


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mouse Xm RABL3 in Complex with Gtpgammss within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:33.5 occ:1.00 O1B B:GSP302 2.5 17.3 1.0 OD2 B:ASP66 2.6 15.0 1.0 O2G B:GSP302 2.7 0.7 1.0 OD1 B:ASP66 3.3 12.0 1.0 CG B:ASP66 3.3 12.6 1.0 S1G B:GSP302 3.4 0.3 1.0 PG B:GSP302 3.5 93.6 1.0 PB B:GSP302 3.7 18.7 1.0 CB B:SER20 3.8 13.6 1.0 N B:SER20 4.0 9.3 1.0 O3B B:GSP302 4.0 47.8 1.0 O2B B:GSP302 4.3 14.9 1.0 CA B:SER20 4.3 9.8 1.0 CB B:LYS19 4.4 8.2 1.0 CE B:LYS19 4.4 16.9 1.0 NZ B:LYS19 4.6 12.9 1.0 O B:HOH440 4.6 20.8 1.0 CB B:ASP66 4.8 8.6 1.0 OG B:SER20 4.8 16.3 1.0 C B:LYS19 4.8 9.4 1.0 O3G B:GSP302 4.9 0.0 1.0 O3A B:GSP302 5.0 15.5 1.0

X.Zhong, L.Su, Y.Yang, E.Nair-Gill, M.Tang, P.Anderton, X.Li, J.Wang, X.Zhan, D.R.Tomchick, C.A.Brautigam, E.M.Y.Moresco, J.H.Choi, B.Beutler. Genetic and Structural Studies of RABL3 Reveal An Essential Role in Lymphoid Development and Function. Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
PubMed: 32220963
DOI: 10.1073/PNAS.2000703117