Magnesium in PDB 6vww: Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2.

The structure of Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2., PDB code: 6vww was solved by Y.Kim, R.Jedrzejczak, N.Maltseva, M.Endres, A.Godzik, K.Michalska, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.06 / 2.20
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	150.539, 150.539, 111.310, 90.00, 90.00, 120.00
R / Rfree (%)	15.8 / 17.8

The structure of Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2. (pdb code 6vww). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2., PDB code: 6vww:

Magnesium binding site 1 out of 1 in the Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:49.8 occ:1.00 OG A:SER262 2.1 78.6 1.0 O A:PRO263 2.3 51.7 1.0 OD1 A:ASP283 2.6 40.5 1.0 CB A:SER262 3.0 68.2 1.0 N A:GLN285 3.3 35.4 1.0 CG A:ASP283 3.3 39.6 1.0 C A:PRO263 3.4 47.0 1.0 C A:SER262 3.5 54.8 1.0 N A:ALA284 3.5 38.7 1.0 CB A:GLN285 3.6 41.2 1.0 OD2 A:ASP283 3.6 42.2 1.0 N A:PRO263 3.6 53.4 1.0 O A:SER262 3.8 58.1 1.0 CA A:SER262 3.8 61.6 1.0 NH2 A:ARG258 3.9 49.2 1.0 CA A:GLN285 4.0 41.6 1.0 NE A:ARG258 4.1 49.9 1.0 CA A:PRO263 4.1 50.8 1.0 C A:ALA284 4.2 35.8 1.0 CA A:ALA284 4.2 37.0 1.0 CD A:PRO263 4.2 56.6 1.0 C A:ASP283 4.3 40.2 1.0 CB A:ALA284 4.3 38.2 1.0 N A:PHE264 4.4 38.0 1.0 CZ A:ARG258 4.4 52.3 1.0 CB A:PHE264 4.4 40.6 1.0 CA A:ASP283 4.4 34.3 1.0 CB A:ASP283 4.5 36.0 1.0 CD2 A:PHE264 4.6 52.7 1.0 CA A:PHE264 4.6 37.5 1.0 CG A:PRO263 4.9 60.1 1.0 CG A:GLN285 4.9 48.0 1.0 N A:SER262 5.0 61.4 1.0

Y.Kim, R.Jedrzejczak, N.Maltseva, M.Endres, A.Godzik, K.Michalska, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2. To Be Published.