Magnesium in PDB 6vz4: Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State

Enzymatic activity of Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State

All present enzymatic activity of Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State:
3.6.4.12;

Other elements in 6vz4:

The structure of Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State also contains other interesting chemical elements:

Fluorine

(F)

30 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State (pdb code 6vz4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State, PDB code: 6vz4:

Magnesium binding site 1 out of 1 in 6vz4

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Magnesium Binding Sites List in 6vz4

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of STH1-ARP7-ARP9-RTT102 Bound to the Nucleosome in Adp Beryllium Fluoride State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
K:Mg1501 b:0.8 occ:1.00	OE2	K:GLU598	2.0	0.2	1.0
	OD2	K:ASP597	2.1	0.8	1.0
	OD1	K:ASP597	2.2	0.8	1.0
	F2	K:BEF1503	2.3	1.0	1.0
	CG	K:ASP597	2.4	0.8	1.0
	CD	K:GLU598	3.0	0.2	1.0
	CG	K:GLU598	3.5	0.2	1.0
	BE	K:BEF1503	3.7	1.0	1.0
	CB	K:ASP597	3.9	0.8	1.0
	F3	K:BEF1503	4.0	1.0	1.0
	OE1	K:GLU598	4.0	0.2	1.0
	N	K:GLU598	4.1	0.2	1.0
	O1B	K:ADP1502	4.6	1.0	1.0
	NE1	K:TRP534	4.7	0.0	1.0
	CB	K:GLU598	4.7	0.2	1.0
	CA	K:GLU598	4.7	0.2	1.0
	CA	K:ASP597	4.7	0.8	1.0
	C	K:ASP597	4.8	0.8	1.0

Reference:

R.W.Baker, J.M.Reimer, P.J.Carman, B.Turegun, T.Arakawa, R.Dominguez, A.E.Leschziner. Structural Insights Into Assembly and Function of the Rsc Chromatin Remodeling Complex Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-020-00528-8

Page generated: Wed Aug 13 19:23:23 2025

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