Magnesium in PDB 6vzt: TTLL6 Bound to Atp

The structure of TTLL6 Bound to Atp, PDB code: 6vzt was solved by K.K.Mahalingan, E.K.Keenen, M.Strickland, Y.Li, Y.Liu, H.L.Ball, M.E.Tanner, N.Tjandra, A.Roll-Mecak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.93 / 2.18
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.633, 75.515, 115.723, 90.00, 90.28, 90.00
R / Rfree (%)	23.7 / 27.1

The binding sites of Magnesium atom in the TTLL6 Bound to Atp (pdb code 6vzt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the TTLL6 Bound to Atp, PDB code: 6vzt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the TTLL6 Bound to Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of TTLL6 Bound to Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg609 b:51.7 occ:1.00 O1B A:ATP601 1.9 50.4 1.0 O2G A:ATP601 1.9 53.5 1.0 O A:HOH705 2.0 54.6 1.0 O2A A:ATP601 2.0 43.0 1.0 O A:HOH736 2.0 46.2 1.0 O A:HOH735 2.5 50.3 1.0 PB A:ATP601 3.1 56.3 1.0 PG A:ATP601 3.1 58.8 1.0 PA A:ATP601 3.3 51.4 1.0 O3A A:ATP601 3.5 50.6 1.0 O3G A:ATP601 3.6 59.6 1.0 O3B A:ATP601 3.6 49.0 1.0 ND2 A:ASN264 3.9 57.8 1.0 O3 A:SO4606 3.9 55.8 1.0 C5' A:ATP601 4.2 48.3 1.0 OD2 A:ASP346 4.2 65.7 1.0 O5' A:ATP601 4.2 44.4 1.0 O2B A:ATP601 4.4 57.2 1.0 O1G A:ATP601 4.4 67.1 1.0 O1A A:ATP601 4.5 54.0 1.0 CG A:GLU359 4.5 69.5 1.0 O2 A:SO4606 4.7 64.7 1.0 ND2 A:ASN361 4.7 80.8 1.0 S A:SO4606 4.9 61.7 1.0 NH2 A:ARG219 4.9 58.1 1.0 CB A:GLU359 4.9 62.8 1.0

Magnesium binding site 2 out of 2 in the TTLL6 Bound to Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of TTLL6 Bound to Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg613 b:58.9 occ:1.00 O3B B:ATP601 1.9 72.2 1.0 O B:HOH704 2.0 60.0 1.0 O B:HOH717 2.1 49.6 1.0 O2A B:ATP601 2.1 52.1 1.0 O B:HOH702 2.6 43.7 1.0 O2G B:ATP601 2.7 65.0 1.0 PG B:ATP601 2.8 62.6 1.0 O3G B:ATP601 3.1 58.5 1.0 PB B:ATP601 3.2 72.4 1.0 PA B:ATP601 3.4 57.3 1.0 O2B B:ATP601 3.6 84.2 1.0 O3A B:ATP601 3.6 58.0 1.0 O1 B:SO4608 3.7 46.3 1.0 ND2 B:ASN264 3.7 61.0 1.0 O1G B:ATP601 4.1 76.4 1.0 C5' B:ATP601 4.2 53.2 1.0 O5' B:ATP601 4.3 52.2 1.0 O1B B:ATP601 4.4 89.1 1.0 OD2 B:ASP346 4.5 63.2 1.0 O1A B:ATP601 4.5 61.8 1.0 O3 B:SO4608 4.6 66.4 1.0 S B:SO4608 4.6 62.3 1.0 N B:GLN180 4.7 67.9 1.0 CG B:GLU359 4.8 62.0 1.0 ND2 B:ASN361 4.8 75.9 1.0 CA B:GLN180 4.9 78.4 1.0 CG B:ASN264 4.9 70.0 1.0 NH2 B:ARG219 4.9 64.3 1.0 O4 B:SO4608 4.9 61.4 1.0

K.K.Mahalingan, E.K.Keenen, M.Strickland, Y.Li, Y.Liu, H.L.Ball, M.E.Tanner, N.Tjandra, A.Roll-Mecak. TTLL6 Bound to Atp To Be Published.